RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA557895", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA557895 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
535727 535727 PRJNA557895_P_NODE_12501_length_261_cov_1.443396_g12146_i0 PRJNA557895 12501 261 1.443396 3.76726356 Desulfosediminicola flagellatus 2569541 Bacteria Bacteria 54.7 0.007   NTclustered gi|1861338670|gb|CP050698.1| 2569541 g12146 i0 92.105 0.145593869731801 38 3 15 0 178 215 145091 145054 Desulfosediminicola flagellatus strain IMCC35005 chromosome, complete genome blastn 38 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfosediminicola Desulfosediminicola flagellatus
12015118 12015118 PRJNA557895_P_NODE_30030_length_167_cov_0.864407_g29675_i0 PRJNA557895 30030 167 0.864407 1.44355969 Desulfoglaeba alkanexedens 361111 Bacteria Bacteria 52.8 0.014   NTclustered gi|1649181537|gb|CP040098.1| 980445 g29675 i0 100 0.167664670658683 28 0 17 0 131 158 97728 97701 Desulfoglaeba alkanexedens ALDC chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfoglaeba Desulfoglaeba alkanexedens
28721125 28721125 PRJNA557895_P_NODE_3067_length_563_cov_1.546693_g2725_i0 PRJNA557895 3067 563 1.546693 8.70788159 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 52 4.69e-4   NR MCP3898297.1 2049433 g2725 i0 31.1 0.873889875666075 164 109 86.3 3 520 35 209 370 MCP3898297.1 reverse transcriptase family protein [Desulfobacteraceae bacterium] diamond 492 52 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
32608059 32608059 PRJNA557895_P_NODE_22860_length_194_cov_1.337931_g22505_i0 PRJNA557895 22860 194 1.337931 2.59558614 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 53.9 2.21e-6   NR MEE9214174.1 2202153 g22505 i0 41 0.943298969072165 61 36 94.3 0 1 183 502 562 MEE9214174.1 enoyl-CoA hydratase-related protein [Thermodesulfobacteriota bacterium] diamond 183 53.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;