RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA557895" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA557895 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18979705 18979705 PRJNA557895_P_NODE_24455_length_187_cov_1.478261_g24100_i0 PRJNA557895 24455 187 1.478261 2.76434807 Borrelia 138 Bacteria Bacteria 52.8 0.016   NTclustered gi|2452986412|gb|CP036557.2| 47466 g24100 i0 100 6.13903743315508 28 0 15 0 139 166 289704 289731 Borrelia miyamotoi strain Yekat-76 chromosome, complete genome blastn 1148 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia miyamotoi
27805579 27805579 PRJNA557895_P_NODE_37844_length_162_cov_0.867257_g37489_i0 PRJNA557895 37844 162 0.867257 1.40495634 Entomospira entomophila 2719988 Bacteria Bacteria 41.6 0.0317   NR WP_167699688.1 2719988 g37489 i0 47.2 0.666666666666667 36 19 66.7 0 45 152 517 552 WP_167699688.1 hypothetical protein [Entomospira entomophila] diamond 108 41.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Entomospira Entomospira entomophila
28009094 28009094 PRJNA557895_P_NODE_37525_length_162_cov_0.902655_g37170_i0 PRJNA557895 37525 162 0.902655 1.4623011 root 1 Root_unresolved Root_unresolved 85.9 7.81e-18   NR MCL2006822.1 166 g37170 i0 68.5 12 54 17 100 0 1 162 185 238 MCL2006822.1 L-glutamate gamma-semialdehyde dehydrogenase [Treponema sp.] diamond 1944 85.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32842401 32842401 PRJNA557895_P_NODE_38280_length_161_cov_0.910714_g37925_i0 PRJNA557895 38280 161 0.910714 1.46624954 Candidatus Ornithospirochaeta 2840653 Bacteria Bacteria 63.5 5.55e-10   NR MBO8469264.1 2840897 g37925 i0 54.7 2.96273291925466 53 24 98.8 0 1 159 248 300 MBO8469264.1 isoleucine--tRNA ligase [Candidatus Ornithospirochaeta stercoravium] diamond 477 63.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Candidatus Ornithospirochaeta Candidatus Ornithospirochaeta stercoravium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;