RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA557895" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA557895 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17113793 17113793 PRJNA557895_P_NODE_24274_length_188_cov_1.215827_g23919_i0 PRJNA557895 24274 188 1.215827 2.28575476 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 115 5.56e-29   NR CEO96949.1 37360 g23919 i0 83.9 6.92553191489362 62 10 98.9 0 3 188 205 266 CEO96949.1 hypothetical protein PBRA_005553 [Plasmodiophora brassicae] diamond 1302 116 0.991379310344828 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29794418 29794418 PRJNA557895_P_NODE_30331_length_167_cov_0.864407_g29976_i0 PRJNA557895 30331 167 0.864407 1.44355969 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 81.3 2.98e-16   NR SPQ94227.1 37360 g29976 i0 61.8 1.97604790419162 55 21 98.8 0 3 167 354 408 SPQ94227.1 unnamed protein product [Plasmodiophora brassicae] diamond 330 81.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;