RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA557895" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA557895 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12015394 12015394 PRJNA557895_P_NODE_6150_length_362_cov_1.769968_g5795_i0 PRJNA557895 6150 362 1.769968 6.40728416 Eukaryota 2759 Plants Plants 237 1.51e-73   NR WIA14873.1 3088 g5795 i0 94.2 329.171270718232 120 7 99.4 0 360 1 308 427 WIA14873.1 hypothetical protein OEZ85_001590 [Tetradesmus obliquus] diamond 119160 238 0.995798319327731 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
30963669 30963669 PRJNA557895_P_NODE_38514_length_161_cov_0.910714_g38159_i0 PRJNA557895 38514 161 0.910714 1.46624954 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 47.8 2.07e-4   NR KAG7667940.1 1650286 g38159 i0 46.2 0.968944099378882 52 28 96.9 0 156 1 343 394 KAG7667940.1 hypothetical protein KSW81_005858 [Chlorella desiccata (nom. nud.)] diamond 156 47.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
31469508 31469508 PRJNA557895_P_NODE_23296_length_192_cov_1.398601_g22941_i0 PRJNA557895 23296 192 1.398601 2.68531392 Coccomyxa viridis 1274662 Plants Plants 68.2 1.95e-11   NR CAL5224452.1 1274662 g22941 i0 43.5 2.90625 62 35 96.9 0 2 187 129 190 CAL5224452.1 g7141 [Coccomyxa viridis] diamond 558 68.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
32211096 32211096 PRJNA557895_P_NODE_23138_length_193_cov_1.062500_g22783_i0 PRJNA557895 23138 193 1.0625 2.050625 root 1 Root_unresolved Root_unresolved 77.4 1.16e-14   NR WIA14621.1 3088 g22783 i0 58.1 5.53367875647668 62 26 96.4 0 186 1 370 431 WIA14621.1 hypothetical protein OEZ85_003127 [Tetradesmus obliquus] diamond 1068 77.8 0.994858611825193 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;