RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA557895" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA557895 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30268751 30268751 PRJNA557895_P_NODE_26432_length_179_cov_1.507692_g26077_i0 PRJNA557895 26432 179 1.507692 2.69876868 Heterolobosea sp. OSA 373144 Heterolobosea other_Eukaryota 57 1.31e-7   NR ABD62822.1 373144 g26077 i0 46.8 2.22905027932961 47 25 78.8 0 168 28 245 291 ABD62822.1 mitochondrial single-subunit RNA polymerase, partial [Heterolobosea sp. OSA] diamond 399 57 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. OSA
31311093 31311093 PRJNA557895_P_NODE_31015_length_166_cov_1.307692_g30660_i0 PRJNA557895 31015 166 1.307692 2.17076872 Leishmania sp. Namibia 2802991 Euglenozoa other_Eukaryota 50.4 2.54e-5   NR XP_067711854.1 2802991 g30660 i0 43.4 0.957831325301205 53 30 95.8 0 163 5 577 629 XP_067711854.1 hypothetical protein JIQ42_06530 [Leishmania sp. Namibia] diamond 159 50.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Namibia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;