RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA557436" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA557436 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29320844 29320844 PRJNA557436_S_NODE_3909_length_201_cov_2.060241_g3861_i0 PRJNA557436 3909 201 2.060241 4.14108441 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 88.2 1.2e-19   NR HYM33368.1 2952917 g3861 i0 61.3 0.925373134328358 62 24 92.5 0 186 1 20 81 HYM33368.1 hypothetical protein [Candidatus Cybelea sp.] diamond 186 88.2 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.
29384181 29384181 PRJNA557436_S_NODE_2209_length_254_cov_1.547945_g2161_i0 PRJNA557436 2209 254 1.547945 3.9317803 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 51.2 2.73e-6   NR HYM31827.1 2952917 g2161 i0 55.6 0.637795275590551 54 23 62.6 1 86 244 1 54 HYM31827.1 hypothetical protein [Candidatus Cybelea sp.] diamond 162 51.2 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.
32101963 32101963 PRJNA557436_S_NODE_1838_length_275_cov_1.420833_g1790_i0 PRJNA557436 1838 275 1.420833 3.90729075 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 47.8 9.01e-4   NR HYM33403.1 2952917 g1790 i0 40.3 0.785454545454545 72 42 78.5 1 4 219 279 349 HYM33403.1 O-antigen ligase family protein [Candidatus Cybelea sp.] diamond 216 47.8 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;