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contig_metadata

26 rows where bioproject = "PRJNA557436" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA557436 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4956324 4956324 PRJNA557436_S_NODE_6864_length_165_cov_1.984615_g6816_i0 PRJNA557436 6864 165 1.984615 3.27461475 Poaceae 4479 Plants Plants 296 5.77e-76   NTclustered gi|1214171912|gb|KY636002.1| 4483 g6816 i0 100 182.30303030303 160 0 97 0 1 160 96491 96332 Aegilops bicornis voucher AE 788 chloroplast, partial genome blastn 30080 296 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Aegilops Aegilops bicornis
5639546 5639546 PRJNA557436_S_NODE_5985_length_173_cov_1.528986_g5937_i0 PRJNA557436 5985 173 1.528986 2.64514578 Cucumis sativus 3659 Plants Plants 222 1.05e-53   NTclustered gi|211940051|gb|FJ377880.1| 3659 g5937 i0 93.377 4.25433526011561 151 9 87 1 23 173 163 14 Cucumis sativus clone CsCent1-E centromere specific repeat 1-E genomic sequence blastn 736 222 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis sativus
6231928 6231928 PRJNA557436_S_NODE_1525_length_298_cov_5.266160_g1477_i0 PRJNA557436 1525 298 5.26616 15.6931568 Eukaryota 2759 Plants Plants 529 1.0499999999999996e-145   NTclustered gi|1878849207|gb|MT796543.1| 3512 g1477 i0 100 95.9731543624161 286 0 96 0 1 286 1667 1952 Quercus rubra isolate DM598 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28600 529 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus rubra
6231931 6231931 PRJNA557436_S_NODE_2725_length_231_cov_3.607143_g2677_i0 PRJNA557436 2725 231 3.607143 8.33250033 Magnoliopsida 3398 Plants Plants 427 2.9399999999999998e-115   NTclustered gi|1878849229|gb|MT796565.1| 3505 g2677 i0 100 100 231 0 100 0 1 231 325 95 Betula pendula isolate DM301 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23100 427 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Betula Betula pendula
6231935 6231935 PRJNA557436_S_NODE_4365_length_193_cov_2.481013_g4317_i0 PRJNA557436 4365 193 2.481013 4.78835509 Poaceae 4479 Plants Plants 243 9.2e-60   NTclustered gi|440550761|gb|KC290897.1| 4565 g4317 i0 90.374 36.279792746114 187 15 96 3 8 193 389 205 Triticum aestivum clone pTa-505 FISH-positive repetitive sequence blastn 7002 244 0.995901639344262 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
6913644 6913644 PRJNA557436_S_NODE_5986_length_173_cov_1.521739_g5938_i0 PRJNA557436 5986 173 1.521739 2.63260847 Secale cereale 4550 Plants Plants 298 1.69e-76   NTclustered gi|21198|emb|X64102.1| 4550 g5938 i0 98.235 40.5028901734104 170 3 98 0 4 173 2990 2821 S.cereale DNA for dispersed repeat sequence (R173-3) blastn 7007 298 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Secale Secale cereale
7506313 7506313 PRJNA557436_S_NODE_1546_length_296_cov_4.279693_g1498_i0 PRJNA557436 1546 296 4.279693 12.66789128 Magnoliopsida 3398 Plants Plants 525 1.35e-144   NTclustered gi|2504382689|gb|ON479685.1| 2708 g1498 i0 98.649 100.182432432432 296 4 100 0 1 296 5241 4946 Citrus x limon 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S large subunit ribosomal RNA gene, complete sequence blastn 29654 525 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus x limon
11331394 11331394 PRJNA557436_S_NODE_3889_length_201_cov_5.421687_g3841_i0 PRJNA557436 3889 201 5.421687 10.89759087 Citrus 2706 Plants Plants 357 3.31e-94   NTclustered gi|2396003254|ref|XR_008051491.1| 2711 g3841 i0 98.522 100.691542288557 203 1 100 2 1 201 2416 2618 PREDICTED: Citrus sinensis 28S ribosomal RNA (LOC127899613), rRNA blastn 20239 357 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
12014650 12014650 PRJNA557436_S_NODE_5250_length_181_cov_1.924658_g5202_i0 PRJNA557436 5250 181 1.924658 3.48363098 Quercus robur 38942 Plants Plants 329 6.340000000000001e-86   NTclustered gi|2293049806|ref|XR_007645197.1| 38942 g5202 i0 99.448 100 181 1 100 0 1 181 3135 3315 PREDICTED: Quercus robur 28S ribosomal RNA (LOC126693076), rRNA blastn 18100 329 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
12014654 12014654 PRJNA557436_S_NODE_550_length_476_cov_1.684807_g502_i0 PRJNA557436 550 476 1.684807 8.01968132 Secale cereale 4550 Plants Plants 784 0   NTclustered gi|995952672|gb|KT724944.1| 4550 g502 i0 97.768 7.65126050420168 448 10 100 0 1 448 6778 6331 Secale cereale clone BAC 122F3 retrotransposon, complete sequence; and satellite pSc250 sequence blastn 3642 784 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Secale Secale cereale
12607241 12607241 PRJNA557436_S_NODE_7390_length_161_cov_5.793651_g7342_i0 PRJNA557436 7390 161 5.793651 9.32777811 Schizanthus 24674 Plants Plants 298 1.56e-76   NTclustered gi|7595536|gb|AF207016.1| 33122 g7342 i0 100 98.1739130434783 161 0 100 0 1 161 1601 1441 Schizanthus pinnatus 18S ribosomal RNA gene, complete sequence blastn 15806 298 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Schizanthus Schizanthus pinnatus
16431011 16431011 PRJNA557436_S_NODE_4473_length_191_cov_7.826923_g4425_i0 PRJNA557436 4473 191 7.826923 14.94942293 Magnoliopsida 3398 Plants Plants 353 4.02e-93   NTclustered gi|30527332|gb|AY095469.1| 3422 g4425 i0 100 100 191 0 100 0 1 191 2613 2803 Tasmannia insipida 26S ribosomal RNA gene, partial sequence blastn 19100 353 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Canellales Winteraceae Tasmannia Tasmannia insipida
17113449 17113449 PRJNA557436_S_NODE_4154_length_197_cov_1.586420_g4106_i0 PRJNA557436 4154 197 1.58642 3.1252474 Secale cereale 4550 Plants Plants 313 7.09e-81   NTclustered gi|565500410|gb|KF835426.1| 4550 g4106 i0 97.297 1237.34517766497 185 3 93 2 15 197 50082 50266 Secale cereale clone BAC956-D7, complete sequence blastn 243757 313 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Secale Secale cereale
17706220 17706220 PRJNA557436_S_NODE_7334_length_162_cov_1.385827_g7286_i0 PRJNA557436 7334 162 1.385827 2.24503974 Acer 4022 Plants Plants 300 4.36e-77   NTclustered gi|2468785498|gb|OP221110.1| 47963 g7286 i0 100 1077.35185185185 162 0 100 0 1 162 5276 5437 Acer pictum subsp. mono isolate Q150 external transcribed spacer small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 174531 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer pictum
18387583 18387583 PRJNA557436_S_NODE_2535_length_239_cov_1.294118_g2487_i0 PRJNA557436 2535 239 1.294118 3.09294202 Secale cereale 4550 Plants Plants 425 1.1e-114   NTclustered gi|565500410|gb|KF835426.1| 4550 g2487 i0 98.745 62.7824267782427 239 3 100 0 1 239 39744 39506 Secale cereale clone BAC956-D7, complete sequence blastn 15005 425 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Secale Secale cereale
18387607 18387607 PRJNA557436_S_NODE_735_length_415_cov_10.139474_g687_i0 PRJNA557436 735 415 10.139474 42.0788171 Secale cereale 4550 Plants Plants 721 0   NTclustered gi|994810|emb|Z54189.1| 4550 g687 i0 98.072 103.084337349398 415 7 100 1 1 415 481 68 Secale cereale DNA for satellite sequence (pSc200 family), subtelomeric blastn 42780 721 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Secale Secale cereale
18979637 18979637 PRJNA557436_S_NODE_2835_length_227_cov_3.156250_g2787_i0 PRJNA557436 2835 227 3.15625 7.1646875 Magnoliopsida 3398 Plants Plants 409 1.04e-109   NTclustered gi|2504382689|gb|ON479685.1| 2708 g2787 i0 99.119 99.8810572687225 227 2 100 0 1 227 3710 3936 Citrus x limon 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S large subunit ribosomal RNA gene, complete sequence blastn 22673 409 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus x limon
19661999 19661999 PRJNA557436_S_NODE_3196_length_217_cov_5.302198_g3148_i0 PRJNA557436 3196 217 5.302198 11.50576966 Cucumis melo 3656 Plants Plants 383 5.98e-102   NTclustered gi|212961222|gb|FJ410944.1| 3656 g3148 i0 98.611 9.51612903225806 216 3 100 0 2 217 295 80 Cucumis melo satellite Csst1-Cm sequence blastn 2065 383 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
20254779 20254779 PRJNA557436_S_NODE_396_length_551_cov_2.748062_g354_i0 PRJNA557436 396 551 2.748062 15.14182162 Oryza 4527 Plants Plants 63.9 2.51e-5   NTclustered gi|2348123842|ref|XM_052286747.1| 4538 g354 i0 90 2.92014519056261 50 3 9 2 2 49 2687 2638 PREDICTED: Oryza glaberrima glutamate receptor 2.9-like (LOC127762302), mRNA blastn 1609 63.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza glaberrima
22212760 22212760 PRJNA557436_S_NODE_5758_length_175_cov_1.700000_g5710_i0 PRJNA557436 5758 175 1.7 2.975 Secale cereale 4550 Plants Plants 307 2.8500000000000004e-79   NTclustered gi|21198|emb|X64102.1| 4550 g5710 i0 98.286 41.6628571428571 175 3 100 0 1 175 3848 3674 S.cereale DNA for dispersed repeat sequence (R173-3) blastn 7291 307 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Secale Secale cereale
24080194 24080194 PRJNA557436_S_NODE_8259_length_156_cov_1.479339_g8211_i0 PRJNA557436 8259 156 1.479339 2.30776884 Triticum 4564 Plants Plants 248 1.5299999999999998e-61   NTclustered gi|110341789|gb|DQ537335.1| 4565 g8211 i0 95.513 669.782051282051 156 6 100 1 1 156 183522 183368 Triticum aestivum clones BAC 1031P08; BAC 754K10; BAC 1344C16, complete sequence blastn 104486 248 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
25354529 25354529 PRJNA557436_S_NODE_3840_length_203_cov_1.047619_g3792_i0 PRJNA557436 3840 203 1.047619 2.12666657 Poaceae 4479 Plants Plants 305 1.23e-78   NTclustered gi|565500410|gb|KF835426.1| 4550 g3792 i0 97.74 422.669950738916 177 4 100 0 1 177 138199 138375 Secale cereale clone BAC956-D7, complete sequence blastn 85802 305 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Secale Secale cereale
26762260 26762260 PRJNA557436_S_NODE_6321_length_170_cov_1.237037_g6273_i0 PRJNA557436 6321 170 1.237037 2.1029629 Acer saccharum 4024 Plants Plants 66.2 6.89e-11   NR KAK1548203.1 4024 g6273 i0 48.2 2.82352941176471 56 29 98.8 0 170 3 142 197 KAK1548203.1 hypothetical protein Q3G72_018492 [Acer saccharum] diamond 480 66.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer saccharum
27805548 27805548 PRJNA557436_S_NODE_4144_length_197_cov_1.790123_g4096_i0 PRJNA557436 4144 197 1.790123 3.52654231 Acer saccharum 4024 Plants Plants 107 2.39e-25   NR KAK1548911.1 4024 g4096 i0 72.3 0.989847715736041 65 18 99 0 3 197 193 257 KAK1548911.1 hypothetical protein Q3G72_019842 [Acer saccharum] diamond 195 107 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer saccharum
29289251 29289251 PRJNA557436_S_NODE_2349_length_247_cov_2.547170_g2301_i0 PRJNA557436 2349 247 2.54717 6.2915099 Sphagnum balticum 128184 Plants Plants 128 8.4e-34   NR CAM5998727.1 128184 g2301 i0 70 2.8663967611336 80 24 97.2 0 242 3 236 315 CAM5998727.1 unnamed protein product [Sphagnum balticum] diamond 708 128 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum balticum
29618800 29618800 PRJNA557436_S_NODE_5910_length_174_cov_1.143885_g5862_i0 PRJNA557436 5910 174 1.143885 1.9903599 root 1 Root_unresolved Root_unresolved 63.5 6.56e-10   NR KAF3334543.1 544730 g5862 i0 52.9 2.62068965517241 51 24 87.9 0 2 154 273 323 KAF3334543.1 methyl-CpG-binding domain protein 4 [Carex littledalei] diamond 456 63.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;