RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA557436", tax_phylum = "Peploviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Peploviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA557436 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1811306 1811306 PRJNA557436_S_NODE_3642_length_207_cov_1.505814_g3594_i0 PRJNA557436 3642 207 1.505814 3.11703498 Simplexvirus humanalpha1 3050292 Viruses Viruses 62.1 3.01e-5   NTclustered gi|2277962942|gb|ON960057.1| 10298 g3594 i0 100 0.159420289855072 33 0 16 0 175 207 50648 50616 Human alphaherpesvirus 1 strain HSV1-San-Francisco-USA-1979-DAB1, complete genome blastn 33 62.1 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
3086647 3086647 PRJNA557436_S_NODE_3303_length_214_cov_22.145251_g3255_i0 PRJNA557436 3303 214 22.145251 47.39083714 Simplexvirus humanalpha1 3050292 Viruses Viruses 113 8.530000000000001e-21   NTclustered gi|2277962942|gb|ON960057.1| 10298 g3255 i0 93.59 0.364485981308411 78 1 36 2 1 77 50574 50648 Human alphaherpesvirus 1 strain HSV1-San-Francisco-USA-1979-DAB1, complete genome blastn 78 113 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
28057882 28057882 PRJNA557436_S_NODE_245_length_676_cov_3.099844_g212_i0 PRJNA557436 245 676 3.099844 20.95494544 Anatid alphaherpesvirus 2 3080522 Viruses Viruses 43.5 0.042   NR XCO53314.1 3080522 g212 i0 43.1 0.257396449704142 58 26 25.7 2 434 607 9 59 XCO53314.1 hypothetical protein [Anatid alphaherpesvirus 2] diamond 174 43.5 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae   Anatid alphaherpesvirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;