RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA557436", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Negarnaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA557436 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6913627 6913627 PRJNA557436_S_NODE_1326_length_316_cov_13.519573_g1278_i0 PRJNA557436 1326 316 13.519573 42.72185068 Orthoavulavirus javaense 3051375 Viruses Viruses 117 1.03e-21   NTclustered gi|1810954291|gb|MN727300.2| 2560319 g1278 i0 94.667 0.237341772151899 75 4 24 0 1 75 15327 15253 Avian paramyxovirus 1 isolate chicken/Indonesia/ITA/012WJ, complete genome blastn 75 117 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
18387582 18387582 PRJNA557436_S_NODE_235_length_691_cov_3.772866_g202_i0 PRJNA557436 235 691 3.772866 26.07050406 Orthoavulavirus javaense 3051375 Viruses Viruses 62.1 1.15e-4   NTclustered gi|1810954291|gb|MN727300.2| 2560319 g202 i0 100 0.0477568740955137 33 0 5 0 1 33 15285 15253 Avian paramyxovirus 1 isolate chicken/Indonesia/ITA/012WJ, complete genome blastn 33 62.1 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
18387599 18387599 PRJNA557436_S_NODE_555_length_474_cov_2.560364_g507_i0 PRJNA557436 555 474 2.560364 12.13612536 Orthoavulavirus javaense 3051375 Viruses Viruses 62.1 7.66e-5   NTclustered gi|1810954291|gb|MN727300.2| 2560319 g507 i0 100 0.069620253164557 33 0 7 0 1 33 15285 15253 Avian paramyxovirus 1 isolate chicken/Indonesia/ITA/012WJ, complete genome blastn 33 62.1 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;