RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA557436" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA557436 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27647659 27647659 PRJNA557436_S_NODE_1744_length_282_cov_2.190283_g1696_i0 PRJNA557436 1744 282 2.190283 6.17659806 Lentisphaeria bacterium 2053569 Bacteria Bacteria 50.8 3.96e-5   NR NQZ69917.1 2053569 g1696 i0 35.9 0.680851063829787 64 41 68.1 0 12 203 120 183 NQZ69917.1 hypothetical protein [Lentisphaeria bacterium] diamond 192 50.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
29921036 29921036 PRJNA557436_S_NODE_111_length_971_cov_4.160256_g89_i0 PRJNA557436 111 971 4.160256 40.39608576 Victivallis lenta 2606640 Bacteria Bacteria 117 5.8e-27   NR WP_154420578.1 2606640 g89 i0 34 0.76313079299691 247 156 74.8 4 127 852 11 255 WP_154420578.1 hypothetical protein [Victivallis lenta] diamond 741 117 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis lenta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;