RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA557436", tax_kingdom = "Thermotogati" and tax_phylum = "Deinococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA557436 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19661994 19661994 PRJNA557436_S_NODE_1396_length_311_cov_2.068841_g1348_i0 PRJNA557436 1396 311 2.068841 6.43409551 Deinococcus aetherius 200252 Bacteria Bacteria 54.7 0.008   NTclustered gi|2281894955|dbj|AP026560.1| 200252 g1348 i0 96.875 0.102893890675241 32 1 10 0 27 58 2077518 2077487 Deinococcus aetherius ST0316 DNA, complete genome blastn 32 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius
28247240 28247240 PRJNA557436_S_NODE_2306_length_249_cov_2.658879_g2258_i0 PRJNA557436 2306 249 2.658879 6.62060871 Meiothermus sp. 1955249 Bacteria Bacteria 98.6 1.39e-22   NR HEU4742827.1 1955249 g2258 i0 56.8 0.975903614457831 81 35 97.6 0 2 244 105 185 HEU4742827.1 UV DNA damage repair endonuclease UvsE [Meiothermus sp.] diamond 243 98.6 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp.
30124310 30124310 PRJNA557436_S_NODE_6432_length_169_cov_1.365672_g6384_i0 PRJNA557436 6432 169 1.365672 2.30798568 Deinococcus 1298 Bacteria Bacteria 56.2 2.17e-7   NR WP_368773369.1 1298 g6384 i0 53.8 2.78698224852071 52 24 92.3 0 169 14 238 289 WP_368773369.1 MULTISPECIES: endonuclease domain-containing protein [Deinococcus] diamond 471 56.2 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;