RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA557436" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA557436 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1811305 1811305 PRJNA557436_S_NODE_3382_length_212_cov_5.067797_g3334_i0 PRJNA557436 3382 212 5.067797 10.74372964 Chlamydomonas reinhardtii 3055 Plants Plants 392 9.67e-105   NTclustered gi|2082243945|ref|XM_043061303.1| 3055 g3334 i0 100 6.68396226415094 212 0 100 0 1 212 605 816 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g199000v5), mRNA blastn 1417 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24761916 24761916 PRJNA557436_S_NODE_5720_length_175_cov_4.992857_g5672_i0 PRJNA557436 5720 175 4.992857 8.73749975 Ernodesmis verticillata 34121 Plants Plants 71.3 4.07e-8   NTclustered gi|3746561|gb|AF061048.1| 34121 g5672 i0 100 0.582857142857143 38 0 29 0 136 173 230 267 Ernodesmis verticillata clone b4/5 chloroplast sequence blastn 102 71.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Valoniaceae Ernodesmis Ernodesmis verticillata
28026485 28026485 PRJNA557436_S_NODE_6145_length_171_cov_2.522059_g6097_i0 PRJNA557436 6145 171 2.522059 4.31272089 Micractinium tetrahymenae 2728915 Plants Plants 42 0.0246   NR KAL4444244.1 2728915 g6097 i0 47.8 0.807017543859649 46 24 80.7 0 26 163 95 140 KAL4444244.1 hypothetical protein ABPG75_011981 [Micractinium tetrahymenae] diamond 138 42 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium tetrahymenae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;