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contig_metadata

8 rows where bioproject = "PRJNA557436", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 8 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 8 ✖

bioproject 1

  • PRJNA557436 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
535641 535641 PRJNA557436_S_NODE_2441_length_243_cov_1.687500_g2393_i0 PRJNA557436 2441 243 1.6875 4.100625 Mus musculus 10090 Chordata Chordata 54.7 0.006   NTclustered gi|52694109|gb|AC091274.11| 10090 g2393 i0 100 0.238683127572016 29 0 12 0 186 214 30077 30105 Mus musculus chromosome 5, clone RP23-149A1, complete sequence blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
535650 535650 PRJNA557436_S_NODE_5561_length_177_cov_2.345070_g5513_i0 PRJNA557436 5561 177 2.34507 4.1507739 Ranitomeya imitator 111125 Chordata Chordata 56.5 0.001   NTclustered gi|2851907260|ref|XM_069748493.1| 111125 g5513 i0 92.5 0.225988700564972 40 1 22 2 50 88 2035 2073 PREDICTED: Ranitomeya imitator heat shock protein family A (Hsp70) member 5 (HSPA5), mRNA blastn 40 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
6913631 6913631 PRJNA557436_S_NODE_186_length_761_cov_4.158402_g155_i0 PRJNA557436 186 761 4.158402 31.64543922 Marmota marmota 9993 Chordata Chordata 54.7 0.021   NTclustered gi|2262836575|ref|XR_007350431.1| 9994 g155 i0 100 0.266754270696452 29 0 4 0 194 222 3841 3813 PREDICTED: Marmota marmota marmota uncharacterized LOC107137837 (LOC107137837), transcript variant X24, misc_RNA blastn 203 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota marmota
9464275 9464275 PRJNA557436_S_NODE_328_length_604_cov_3.047452_g290_i0 PRJNA557436 328 604 3.047452 18.40661008 Leopardus geoffroyi 46844 Chordata Chordata 54.7 0.017   NTclustered gi|2166871578|ref|XR_006701615.1| 46844 g290 i0 100 0.0480132450331126 29 0 5 0 545 573 162 190 PREDICTED: Leopardus geoffroyi uncharacterized LOC123576865 (LOC123576865), ncRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Leopardus Leopardus geoffroyi
18387586 18387586 PRJNA557436_S_NODE_2795_length_229_cov_1.159794_g2747_i0 PRJNA557436 2795 229 1.159794 2.65592826 Tinamus guttatus 94827 Chordata Chordata 54.7 0.006   NTclustered gi|719792810|ref|XM_010225898.1| 94827 g2747 i0 92.308 0.170305676855895 39 1 17 2 134 171 919 882 PREDICTED: Tinamus guttatus keratin 18 (KRT18), mRNA blastn 39 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
23488095 23488095 PRJNA557436_S_NODE_159_length_830_cov_4.270440_g131_i0 PRJNA557436 159 830 4.27044 35.444652 Marmota marmota 9993 Chordata Chordata 54.7 0.023   NTclustered gi|2262836575|ref|XR_007350431.1| 9994 g131 i0 100 0.244578313253012 29 0 3 0 194 222 3841 3813 PREDICTED: Marmota marmota marmota uncharacterized LOC107137837 (LOC107137837), transcript variant X24, misc_RNA blastn 203 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota marmota
28089451 28089451 PRJNA557436_S_NODE_4125_length_197_cov_2.530864_g4077_i0 PRJNA557436 4125 197 2.530864 4.98580208 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 54.3 1.68e-6   NR CAI9150999.1 3082113 g4077 i0 96.6 0.441624365482233 29 1 44.2 0 1 87 501 529 CAI9150999.1 unnamed protein product, partial [Rangifer tarandus platyrhynchus] diamond 87 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
32527709 32527709 PRJNA557436_S_NODE_3519_length_209_cov_5.051724_g3471_i0 PRJNA557436 3519 209 5.051724 10.55810316 Artiodactyla 91561 Chordata Chordata 47.4 5.67e-4   NR XP_069396403.1 9728 g3471 i0 70.3 2.32535885167464 37 10 53.1 1 140 30 115 150 XP_069396403.1 collagen alpha-1(I) chain-like, partial [Delphinus delphis] diamond 486 47.8 0.99163179916318 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Delphinus Delphinus delphis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;