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contig_metadata

26 rows where bioproject = "PRJNA557436", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 26 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 26 ✖

bioproject 1

  • PRJNA557436 · 26 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18387600 18387600 PRJNA557436_S_NODE_5675_length_176_cov_1.567376_g5627_i0 PRJNA557436 5675 176 1.567376 2.75858176 root 1 Root_unresolved Root_unresolved 116 1.13e-29   NR WP_353268876.1 1962908 g5627 i0 87.9 5.93181818181818 58 7 98.9 0 175 2 3 60 WP_353268876.1 DNA cytosine methyltransferase [Gemmatimonas sp.] diamond 1044 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
27110249 27110249 PRJNA557436_S_NODE_6442_length_169_cov_1.261194_g6394_i0 PRJNA557436 6442 169 1.261194 2.13141786 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 62 1.46e-9   NR MBA2683778.1 2026741 g6394 i0 53.6 0.994082840236686 56 25 97.6 1 167 3 67 122 MBA2683778.1 PD-(D/E)XK nuclease-like domain-containing protein [Gemmatimonadaceae bacterium] diamond 168 62 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27868381 27868381 PRJNA557436_S_NODE_2685_length_233_cov_1.727273_g2637_i0 PRJNA557436 2685 233 1.727273 4.02454609 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 84.7 5.5e-17   NR MBK7786840.1 2026742 g2637 i0 69.5 0.759656652360515 59 18 76 0 179 3 182 240 MBK7786840.1 hypothetical protein [Gemmatimonadota bacterium] diamond 177 84.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27931671 27931671 PRJNA557436_S_NODE_4225_length_196_cov_1.534161_g4177_i0 PRJNA557436 4225 196 1.534161 3.00695556 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 47.8 2.89e-4   NR MBK8006763.1 2026742 g4177 i0 54.2 0.73469387755102 48 22 73.5 0 51 194 36 83 MBK8006763.1 hypothetical protein [Gemmatimonadota bacterium] diamond 144 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28436969 28436969 PRJNA557436_S_NODE_3246_length_216_cov_1.790055_g3198_i0 PRJNA557436 3246 216 1.790055 3.8665188 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 93.2 5.07e-21   NR MCR4338513.1 2026741 g3198 i0 79.7 1.63888888888889 59 12 81.9 0 179 3 1 59 MCR4338513.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 354 93.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28657999 28657999 PRJNA557436_S_NODE_6767_length_166_cov_1.610687_g6719_i0 PRJNA557436 6767 166 1.610687 2.67374042 Gemmatimonas sp. 1962908 Bacteria Bacteria 54.3 1.08e-6   NR MQA91969.1 1962908 g6719 i0 50 1.7710843373494 48 24 86.7 0 13 156 78 125 MQA91969.1 DUF932 domain-containing protein [Gemmatimonas sp.] diamond 294 54.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
29163299 29163299 PRJNA557436_S_NODE_5369_length_180_cov_1.413793_g5321_i0 PRJNA557436 5369 180 1.413793 2.5448274 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 57.8 8.1e-8   NR MBK7352201.1 2026742 g5321 i0 73 1.23333333333333 37 10 61.7 0 70 180 1 37 MBK7352201.1 DEAD/DEAH box helicase family protein [Gemmatimonadota bacterium] diamond 222 57.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29871820 29871820 PRJNA557436_S_NODE_8291_length_156_cov_1.280992_g8243_i0 PRJNA557436 8291 156 1.280992 1.99834752 Pseudomonadati 3379134 Bacteria Bacteria 70.5 1.81e-12   NR HEX4936991.1 2026741 g8243 i0 64 1.90384615384615 50 18 96.2 0 151 2 216 265 HEX4936991.1 phage terminase large subunit [Gemmatimonadaceae bacterium] diamond 297 70.9 0.994358251057828 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30029871 30029871 PRJNA557436_S_NODE_5871_length_174_cov_1.474820_g5823_i0 PRJNA557436 5871 174 1.47482 2.5661868 FCB group 1783270 Bacteria Bacteria 82.8 5.05e-17   NR MBK8251033.1 2026742 g5823 i0 88.4 2.22413793103448 43 5 74.1 0 130 2 1 43 MBK8251033.1 DNA adenine methylase [Gemmatimonadota bacterium] diamond 387 83.6 0.990430622009569 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30141600 30141600 PRJNA557436_S_NODE_692_length_426_cov_2.578005_g644_i0 PRJNA557436 692 426 2.578005 10.9823013 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 62 8.75e-9   NR MBK7786953.1 2026742 g644 i0 40 0.598591549295775 85 41 59.2 2 337 86 97 172 MBK7786953.1 hypothetical protein [Gemmatimonadota bacterium] diamond 255 62 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30204948 30204948 PRJNA557436_S_NODE_9032_length_152_cov_1.914530_g8984_i0 PRJNA557436 9032 152 1.91453 2.9100856 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.9 0.00418   NR HXB28089.1 2026741 g8984 i0 84 0.493421052631579 25 4 49.3 0 148 74 310 334 HXB28089.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase [Gemmatimonadaceae bacterium] diamond 75 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30489611 30489611 PRJNA557436_S_NODE_6493_length_168_cov_2.165414_g6445_i0 PRJNA557436 6493 168 2.165414 3.63789552 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 46.6 7.25e-5   NR MFL5381283.1 3047548 g6445 i0 50 0.785714285714286 44 13 62.5 2 37 141 30 73 MFL5381283.1 hypothetical protein [Longimicrobiaceae bacterium] diamond 132 46.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
30584177 30584177 PRJNA557436_S_NODE_5533_length_178_cov_1.230769_g5485_i0 PRJNA557436 5533 178 1.230769 2.19076882 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 129 2.9699999999999993e-34   NR MBP9106036.1 2026741 g5485 i0 98.3 0.97752808988764 58 1 97.8 0 176 3 297 354 MBP9106036.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 174 129 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30710690 30710690 PRJNA557436_S_NODE_5694_length_176_cov_1.418440_g5646_i0 PRJNA557436 5694 176 1.41844 2.4964544 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 119 2.66e-31   NR MBP7622037.1 2448054 g5646 i0 98.3 0.988636363636364 58 1 98.9 0 1 174 82 139 MBP7622037.1 hypothetical protein [Gemmatimonadales bacterium] diamond 174 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30805566 30805566 PRJNA557436_S_NODE_7734_length_159_cov_1.943548_g7686_i0 PRJNA557436 7734 159 1.943548 3.09024132 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 78.2 3.81e-15   NR MBK7352201.1 2026742 g7686 i0 69.2 1.9622641509434 52 16 98.1 0 156 1 31 82 MBK7352201.1 DEAD/DEAH box helicase family protein [Gemmatimonadota bacterium] diamond 312 78.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30900448 30900448 PRJNA557436_S_NODE_2874_length_226_cov_2.727749_g2826_i0 PRJNA557436 2874 226 2.727749 6.16471274 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 79.7 7.93e-16   NR MCR4338513.1 2026741 g2826 i0 68.4 0.756637168141593 57 18 75.7 0 1 171 215 271 MCR4338513.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 171 79.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30931985 30931985 PRJNA557436_S_NODE_8634_length_154_cov_1.596639_g8586_i0 PRJNA557436 8634 154 1.596639 2.45882406 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 54.3 8.84e-7   NR MBK7786849.1 2026742 g8586 i0 61 3.37012987012987 41 16 79.9 0 12 134 37 77 MBK7786849.1 hypothetical protein [Gemmatimonadota bacterium] diamond 519 54.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31026859 31026859 PRJNA557436_S_NODE_795_length_400_cov_1.780822_g747_i0 PRJNA557436 795 400 1.780822 7.123288 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 131 6.55e-36   NR TFG65467.1 2448054 g747 i0 67.9 0.585 78 25 58.5 0 166 399 46 123 TFG65467.1 MAG: class I SAM-dependent methyltransferase [Gemmatimonadales bacterium] diamond 234 131 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31501115 31501115 PRJNA557436_S_NODE_1596_length_293_cov_2.368217_g1548_i0 PRJNA557436 1596 293 2.368217 6.93887581 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 103 1.9699999999999998e-23   NR MBK7352201.1 2026742 g1548 i0 55.6 2.02730375426621 99 42 99.3 2 292 2 347 445 MBK7352201.1 DEAD/DEAH box helicase family protein [Gemmatimonadota bacterium] diamond 594 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31785403 31785403 PRJNA557436_S_NODE_3837_length_203_cov_1.172619_g3789_i0 PRJNA557436 3837 203 1.172619 2.38041657 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 55.8 4.76e-7   NR MCR4338329.1 2026741 g3789 i0 48.3 0.886699507389163 60 30 88.7 1 23 202 254 312 MCR4338329.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 180 55.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31943616 31943616 PRJNA557436_S_NODE_7777_length_159_cov_1.483871_g7729_i0 PRJNA557436 7777 159 1.483871 2.35935489 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 70.5 6.79e-14   NR MBK8251035.1 2026742 g7729 i0 78 0.773584905660377 41 9 77.4 0 125 3 1 41 MBK8251035.1 hypothetical protein [Gemmatimonadota bacterium] diamond 123 70.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31957818 31957818 PRJNA557436_S_NODE_3537_length_209_cov_1.965517_g3489_i0 PRJNA557436 3537 209 1.965517 4.10793053 Pseudomonadati 3379134 Bacteria Bacteria 110 1.93e-26   NR MBK7352201.1 2026742 g3489 i0 73.5 1.95215311004785 68 18 97.6 0 2 205 193 260 MBK7352201.1 DEAD/DEAH box helicase family protein [Gemmatimonadota bacterium] diamond 408 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31975416 31975416 PRJNA557436_S_NODE_5958_length_173_cov_1.811594_g5910_i0 PRJNA557436 5958 173 1.811594 3.13405762 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.4 0.0202   NR HEY2066437.1 2026741 g5910 i0 47.4 0.658959537572254 38 19 64.2 1 118 8 538 575 HEY2066437.1 2Fe-2S iron-sulfur cluster-binding protein [Gemmatimonadaceae bacterium] diamond 114 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32070346 32070346 PRJNA557436_S_NODE_7138_length_163_cov_1.906250_g7090_i0 PRJNA557436 7138 163 1.90625 3.1071875 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 80.1 2.81e-17   NR HEX4935563.1 2026741 g7090 i0 75 0.957055214723926 52 13 95.7 0 161 6 12 63 HEX4935563.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 156 80.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32418481 32418481 PRJNA557436_S_NODE_6019_length_173_cov_1.144928_g5971_i0 PRJNA557436 6019 173 1.144928 1.98072544 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 125 2.08e-33   NR MBP7622037.1 2448054 g5971 i0 100 0.988439306358382 57 0 98.8 0 3 173 15 71 MBP7622037.1 hypothetical protein [Gemmatimonadales bacterium] diamond 171 125 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32891284 32891284 PRJNA557436_S_NODE_9160_length_152_cov_1.213675_g9112_i0 PRJNA557436 9160 152 1.213675 1.844786 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 48.9 7.12e-5   NR MDP9203647.1 2026742 g9112 i0 56.5 0.907894736842105 46 20 90.8 0 9 146 102 147 MDP9203647.1 hypothetical protein [Gemmatimonadota bacterium] diamond 138 48.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;