RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA557436", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA557436 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27377687 27377687 PRJNA557436_S_NODE_2803_length_228_cov_3.290155_g2755_i0 PRJNA557436 2803 228 3.290155 7.5015534 FCB group 1783270 Bacteria Bacteria 49.3 1.47e-4   NR MFA7195739.1 2026760 g2755 i0 45.3 1.39473684210526 53 28 69.7 1 68 226 456 507 MFA7195739.1 hypothetical protein [Fidelibacterota bacterium] diamond 318 49.3 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
28342149 28342149 PRJNA557436_S_NODE_2986_length_223_cov_2.425532_g2938_i0 PRJNA557436 2986 223 2.425532 5.40893636 Fidelibacterota bacterium 2026760 Bacteria Bacteria 51.6 1.99e-5   NR MBT6472590.1 2026760 g2938 i0 38.8 0.901345291479821 67 41 90.1 0 21 221 116 182 MBT6472590.1 hypothetical protein [Fidelibacterota bacterium] diamond 201 51.6 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31279425 31279425 PRJNA557436_S_NODE_8195_length_156_cov_2.247934_g8147_i0 PRJNA557436 8195 156 2.247934 3.50677704 Fidelibacterota bacterium 2026760 Bacteria Bacteria 64.7 1.76e-10   NR MBT6472590.1 2026760 g8147 i0 62.8 1.65384615384615 43 16 82.7 0 21 149 265 307 MBT6472590.1 hypothetical protein [Fidelibacterota bacterium] diamond 258 64.7 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32274518 32274518 PRJNA557436_S_NODE_778_length_403_cov_2.755435_g730_i0 PRJNA557436 778 403 2.755435 11.10440305 FCB group 1783270 Bacteria Bacteria 46.6 0.00882   NR MFA7195739.1 2026760 g730 i0 33.3 1.25062034739454 84 49 59.6 2 401 162 500 580 MFA7195739.1 hypothetical protein [Fidelibacterota bacterium] diamond 504 46.6 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;