RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA557436", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 10 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 10 ✖

bioproject 1

  • PRJNA557436 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26889217 26889217 PRJNA557436_S_NODE_7901_length_158_cov_1.666667_g7853_i0 PRJNA557436 7901 158 1.666667 2.63333386 Fibrobacteria bacterium 2725311 Bacteria Bacteria 96.7 1.1699999999999997e-23   NR HNY31751.1 2725311 g7853 i0 96.1 0.968354430379747 51 2 96.8 0 2 154 84 134 HNY31751.1 hypothetical protein [Fibrobacteria bacterium] diamond 153 96.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
27205020 27205020 PRJNA557436_S_NODE_2422_length_244_cov_1.985646_g2374_i0 PRJNA557436 2422 244 1.985646 4.84497624 Fibrobacteria bacterium 2725311 Bacteria Bacteria 144 5.02e-42   NR HQF54192.1 2725311 g2374 i0 86.1 0.971311475409836 79 11 97.1 0 7 243 1 79 HQF54192.1 single-stranded DNA-binding protein [Fibrobacteria bacterium] diamond 237 144 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
27363602 27363602 PRJNA557436_S_NODE_8003_length_158_cov_0.975610_g7955_i0 PRJNA557436 8003 158 0.97561 1.5414638 Fibrobacterota bacterium 2052160 Bacteria Bacteria 43.9 0.00463   NR MBK9580296.1 2052160 g7955 i0 34.6 0.987341772151899 52 34 98.7 0 1 156 711 762 MBK9580296.1 hypothetical protein [Fibrobacterota bacterium] diamond 156 43.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
28910140 28910140 PRJNA557436_S_NODE_4528_length_191_cov_1.032051_g4480_i0 PRJNA557436 4528 191 1.032051 1.97121741 Fibrobacteria bacterium 2725311 Bacteria Bacteria 82 2.67e-16   NR HNY31768.1 2725311 g4480 i0 70.6 0.801047120418848 51 15 80.1 0 190 38 339 389 HNY31768.1 hypothetical protein [Fibrobacteria bacterium] diamond 153 82 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
28942284 28942284 PRJNA557436_S_NODE_648_length_439_cov_2.740099_g600_i0 PRJNA557436 648 439 2.740099 12.02903461 Fibrobacterota bacterium 2052160 Bacteria Bacteria 85.5 3.65e-16   NR MBK9580269.1 2052160 g600 i0 47.5 0.806378132118451 118 56 79.3 4 357 10 338 451 MBK9580269.1 laminin G domain-containing protein [Fibrobacterota bacterium] diamond 354 85.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
29068492 29068492 PRJNA557436_S_NODE_7508_length_161_cov_1.134921_g7460_i0 PRJNA557436 7508 161 1.134921 1.82722281 Fibrobacteria bacterium 2725311 Bacteria Bacteria 66.2 6.22e-11   NR HNY31767.1 2725311 g7460 i0 67.4 0.857142857142857 46 15 85.7 0 9 146 14 59 HNY31767.1 hypothetical protein [Fibrobacteria bacterium] diamond 138 66.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
29194801 29194801 PRJNA557436_S_NODE_6289_length_170_cov_1.577778_g6241_i0 PRJNA557436 6289 170 1.577778 2.6822226 Fibrobacteria bacterium 2725311 Bacteria Bacteria 53.1 2.95e-6   NR HNY31724.1 2725311 g6241 i0 56.8 0.776470588235294 44 19 77.6 0 132 1 1 44 HNY31724.1 hypothetical protein [Fibrobacteria bacterium] diamond 132 53.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
29320851 29320851 PRJNA557436_S_NODE_6769_length_166_cov_1.610687_g6721_i0 PRJNA557436 6769 166 1.610687 2.67374042 Fibrobacteria bacterium 2725311 Bacteria Bacteria 70.1 5.36e-13   NR HNY31728.1 2725311 g6721 i0 59.3 0.975903614457831 54 22 97.6 0 3 164 81 134 HNY31728.1 hypothetical protein [Fibrobacteria bacterium] diamond 162 70.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
30047051 30047051 PRJNA557436_S_NODE_3331_length_214_cov_1.564246_g3283_i0 PRJNA557436 3331 214 1.564246 3.34748644 Fibrobacterota bacterium 2052160 Bacteria Bacteria 102 8.51e-26   NR MBK9580280.1 2052160 g3283 i0 100 0.686915887850467 49 0 68.7 0 68 214 1 49 MBK9580280.1 hypothetical protein [Fibrobacterota bacterium] diamond 147 102 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
30078708 30078708 PRJNA557436_S_NODE_9352_length_151_cov_1.353448_g9304_i0 PRJNA557436 9352 151 1.353448 2.04370648 Fibrobacterota bacterium 2052160 Bacteria Bacteria 81.3 1.16e-16   NR MBK9580316.1 2052160 g9304 i0 79.6 1.82781456953642 49 9 97.4 1 3 149 126 173 MBK9580316.1 DNA adenine methylase [Fibrobacterota bacterium] diamond 276 81.3 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;