RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA557436", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Methylomirabilota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Methylomirabilota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA557436 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30426820 30426820 PRJNA557436_S_NODE_5413_length_179_cov_2.013889_g5365_i0 PRJNA557436 5413 179 2.013889 3.60486131 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 66.2 7.95e-12   NR HEU4437679.1 2072417 g5365 i0 64.4 1.97765363128492 59 20 98.9 1 177 1 55 112 HEU4437679.1 XF1762 family protein [Candidatus Methylomirabilota bacterium] diamond 354 66.2 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
31374554 31374554 PRJNA557436_S_NODE_5056_length_184_cov_1.114094_g5008_i0 PRJNA557436 5056 184 1.114094 2.04993296 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 122 3.01e-33   NR MFA5027009.1 2072417 g5008 i0 94.8 0.945652173913043 58 3 94.6 0 3 176 101 158 MFA5027009.1 recombination protein NinG [Candidatus Methylomirabilota bacterium] diamond 174 122 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
32891274 32891274 PRJNA557436_S_NODE_4880_length_186_cov_1.231788_g4832_i0 PRJNA557436 4880 186 1.231788 2.29112568 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 65.5 2.08e-12   NR MFA5027017.1 2072417 g4832 i0 50.8 0.951612903225806 59 29 95.2 0 185 9 3 61 MFA5027017.1 Cro/CI family transcriptional regulator [Candidatus Methylomirabilota bacterium] diamond 177 65.5 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;