RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA556992", tax_phylum = "Promethearchaeota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

  • Promethearchaeota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA556992 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27204575 27204575 PRJNA556992_P_NODE_156842_length_353_cov_3.403571_g154654_i0 PRJNA556992 156842 353 3.403571 12.01460563 Promethearchaeota archaeon 2053489 Archaea Archaea 43.9 0.0276   NR MBD3405030.1 2053489 g154654 i0 50 0.339943342776204 40 19 34 1 69 188 60 98 MBD3405030.1 hypothetical protein [Promethearchaeota archaeon] diamond 120 43.9 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
31058594 31058594 PRJNA556992_P_NODE_921255_length_238_cov_6.012121_g919065_i0 PRJNA556992 921255 238 6.012121 14.30884798 Promethearchaeota archaeon 2053489 Archaea Archaea 51.2 3.58e-5   NR NMC08204.1 2053489 g919065 i0 35.2 0.894957983193277 71 46 89.5 0 231 19 439 509 NMC08204.1 hypothetical protein [Promethearchaeota archaeon] diamond 213 51.2 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
31215700 31215700 PRJNA556992_P_NODE_716855_length_250_cov_2.237288_g714666_i0 PRJNA556992 716855 250 2.237288 5.59322 Promethearchaeota archaeon 2053489 Archaea Archaea 48.1 4.91e-4   NR MBD3339177.1 2053489 g714666 i0 70.6 0.408 34 10 40.8 0 1 102 333 366 MBD3339177.1 type III-B CRISPR module RAMP protein Cmr6 [Promethearchaeota archaeon] diamond 102 48.1 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
31753600 31753600 PRJNA556992_P_NODE_398857_length_277_cov_1.132353_g396668_i0 PRJNA556992 398857 277 1.132353 3.13661781 Promethearchaeota archaeon 2053489 Archaea Archaea 50.8 2.45e-5   NR MBD3406177.1 2053489 g396668 i0 62.8 0.465703971119134 43 14 46.6 1 122 250 1 41 MBD3406177.1 hypothetical protein [Promethearchaeota archaeon] diamond 129 50.8 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;