RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA556992" and tax_phylum = "Fornicata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
523386 523386 PRJNA556992_P_NODE_1131301_length_205_cov_9.090909_g1129110_i0 PRJNA556992 1131301 205 9.090909 18.63636345 root 1 Root_unresolved Root_unresolved 100 7.729999999999999e-23   NR CAK8761882.1 28002 g1129110 i0 77.9 2.98536585365854 68 14 99.5 1 2 205 32 98 CAK8761882.1 HINF_004284 [Hexamita inflata] diamond 612 100 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
16430511 16430511 PRJNA556992_P_NODE_860253_length_243_cov_0.905882_g858063_i0 PRJNA556992 860253 243 0.905882 2.20129326 Giardia 5740 Fornicata other_Eukaryota 390 4.089999999999999e-104   NTclustered gi|1940865969|ref|XR_005248676.1| 5741 g858063 i0 95.885 11.1810699588477 243 7 100 1 1 243 1433 1672 Giardia intestinalis 28S ribosomal RNA (GL50803_00r40029), partial rRNA blastn 2717 390 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
26888804 26888804 PRJNA556992_P_NODE_240241_length_309_cov_3.415254_g238053_i0 PRJNA556992 240241 309 3.415254 10.55313486 Aduncisulcus paluster 2918883 Fornicata other_Eukaryota 57.8 5.97e-8   NR GKT17674.1 2918883 g238053 i0 59.6 0.504854368932039 52 17 50.5 1 158 3 72 119 GKT17674.1 hypothetical protein ADUPG1_004212, partial [Aduncisulcus paluster] diamond 156 57.8 1 Eukaryota Metamonada   Fornicata       Aduncisulcus Aduncisulcus paluster
27725013 27725013 PRJNA556992_P_NODE_1057064_length_223_cov_4.613333_g1054874_i0 PRJNA556992 1057064 223 4.613333 10.28773259 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.1 0.0212   NR ESU43091.1 5741 g1054874 i0 42.4 2.48878923766816 59 32 79.4 1 5 181 214 270 ESU43091.1 Variant-specific surface protein [Giardia intestinalis] diamond 555 43.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
28657672 28657672 PRJNA556992_P_NODE_421427_length_274_cov_3.004975_g419238_i0 PRJNA556992 421427 274 3.004975 8.2336315 Giardia intestinalis 5741 Fornicata other_Eukaryota 48.5 4.66e-4   NR ESU44462.1 5741 g419238 i0 38 0.864963503649635 79 44 81 1 9 230 221 299 ESU44462.1 Variant-specific surface protein [Giardia intestinalis] diamond 237 48.5 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
28672018 28672018 PRJNA556992_P_NODE_272647_length_295_cov_4.963964_g270458_i0 PRJNA556992 272647 295 4.963964 14.6436938 root 1 Root_unresolved Root_unresolved 53.9 8.42e-6   NR GIQ87934.1 797122 g270458 i0 51.7 1.24067796610169 60 23 54.9 2 10 171 254 313 GIQ87934.1 hypothetical protein KIPB_010079, partial [Kipferlia bialata] diamond 366 53.9 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
29194294 29194294 PRJNA556992_P_NODE_1171589_length_196_cov_15.699187_g1169398_i0 PRJNA556992 1171589 196 15.699187 30.77040652 Giardia intestinalis assemblage B 1394984 Fornicata other_Eukaryota 45.4 0.00228   NR KWX11092.1 1394984 g1169398 i0 55.3 1.68367346938776 38 16 58.2 1 145 32 564 600 KWX11092.1 hypothetical protein QR46_4954 [Giardia intestinalis assemblage B] diamond 330 45.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
29352588 29352588 PRJNA556992_P_NODE_990549_length_231_cov_4.550633_g988359_i0 PRJNA556992 990549 231 4.550633 10.51196223 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 42 0.0307   NR XP_067761641.1 348837 g988359 i0 32.3 0.805194805194805 62 41 79.2 1 191 9 8 69 XP_067761641.1 Calmodulin [Spironucleus salmonicida] diamond 186 42 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
29762652 29762652 PRJNA556992_P_NODE_702451_length_251_cov_1.398876_g700262_i0 PRJNA556992 702451 251 1.398876 3.51117876 Giardia intestinalis 5741 Fornicata other_Eukaryota 44.3 0.0119   NR ESU44555.1 5741 g700262 i0 50 0.454183266932271 38 19 45.4 0 210 97 636 673 ESU44555.1 Variant-specific surface protein [Giardia intestinalis] diamond 114 44.3 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
30172992 30172992 PRJNA556992_P_NODE_1038712_length_226_cov_4.790850_g1036522_i0 PRJNA556992 1038712 226 4.79085 10.827321 Giardia intestinalis 5741 Fornicata other_Eukaryota 55.1 1.3e-6   NR ESU42691.1 5741 g1036522 i0 47.6 0.836283185840708 63 26 83.6 2 12 200 214 269 ESU42691.1 Variant-specific surface protein [Giardia intestinalis] diamond 189 55.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
30472175 30472175 PRJNA556992_P_NODE_831293_length_244_cov_2.385965_g829103_i0 PRJNA556992 831293 244 2.385965 5.8217546 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 9.04e-5   NR TNJ28267.1 5742 g829103 i0 48.3 3 60 28 73.8 3 6 185 181 237 TNJ28267.1 Kinase, CAMK CAMKL [Giardia muris] diamond 732 50.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
31469391 31469391 PRJNA556992_P_NODE_809896_length_245_cov_3.029070_g807706_i0 PRJNA556992 809896 245 3.02907 7.4212215 Kipferlia bialata 797122 Fornicata other_Eukaryota 67.4 7.84e-11   NR GIQ86879.1 797122 g807706 i0 37.5 2.93877551020408 80 50 98 0 6 245 212 291 GIQ86879.1 hypothetical protein KIPB_008809 [Kipferlia bialata] diamond 720 67.4 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
31912035 31912035 PRJNA556992_P_NODE_768957_length_247_cov_4.258621_g766767_i0 PRJNA556992 768957 247 4.258621 10.51879387 Giardia intestinalis assemblage B 1394984 Fornicata other_Eukaryota 53.1 8.56e-6   NR KWX12983.1 1394984 g766767 i0 39.7 0.947368421052632 78 41 88.7 4 237 19 447 523 KWX12983.1 High cysteine membrane protein Group 2/ Variant-specific surface protein [Giardia intestinalis assemblage B] diamond 234 53.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;