RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA556992" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27394783 27394783 PRJNA556992_P_NODE_456023_length_271_cov_2.010101_g453834_i0 PRJNA556992 456023 271 2.010101 5.44737371 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 57 2.93e-7   NR ETO20010.1 46433 g453834 i0 37.8 0.907749077490775 82 40 89.7 3 25 267 138 209 ETO20010.1 hypothetical protein RFI_17208, partial [Reticulomyxa filosa] diamond 246 57 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28183723 28183723 PRJNA556992_P_NODE_439646_length_273_cov_0.980000_g437457_i0 PRJNA556992 439646 273 0.98 2.6754 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 51.6 2.98e-5   NR ETO13759.1 46433 g437457 i0 34.9 0.912087912087912 83 50 86.8 1 240 4 102 184 ETO13759.1 hypothetical protein RFI_23610 [Reticulomyxa filosa] diamond 249 51.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28356108 28356108 PRJNA556992_P_NODE_824126_length_244_cov_7.385965_g821936_i0 PRJNA556992 824126 244 7.385965 18.0217546 root 1 Root_unresolved Root_unresolved 109 7.690000000000001e-27   NR ETO35564.1 46433 g821936 i0 63 13.9303278688525 81 30 99.6 0 243 1 112 192 ETO35564.1 succinyl-coa:alpha-ketoacid-coa transferase [Reticulomyxa filosa] diamond 3399 110 0.990909090909091 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28562688 28562688 PRJNA556992_P_NODE_1050787_length_224_cov_7.966887_g1048597_i0 PRJNA556992 1050787 224 7.966887 17.84582688 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 73.2 2.76e-14   NR ETO27543.1 46433 g1048597 i0 65.3 0.65625 49 17 65.6 0 224 78 22 70 ETO27543.1 hypothetical protein RFI_09592, partial [Reticulomyxa filosa] diamond 147 73.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29019550 29019550 PRJNA556992_P_NODE_672068_length_253_cov_2.172222_g669879_i0 PRJNA556992 672068 253 2.172222 5.49572166 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.45e-9   NR ETO12094.1 46433 g669879 i0 57.4 1.12648221343874 47 20 55.7 0 247 107 589 635 ETO12094.1 WD-40 repeat-containing protein [Reticulomyxa filosa] diamond 285 63.9 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29935126 29935126 PRJNA556992_P_NODE_925651_length_238_cov_3.145455_g923461_i0 PRJNA556992 925651 238 3.145455 7.4861829 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 55.1 1.51e-6   NR ETO12279.1 46433 g923461 i0 58.1 2.91176470588235 43 18 54.2 0 233 105 133 175 ETO12279.1 actin binding protein [Reticulomyxa filosa] diamond 693 55.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30300228 30300228 PRJNA556992_P_NODE_624412_length_257_cov_1.586957_g622223_i0 PRJNA556992 624412 257 1.586957 4.07847949 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 87.8 4.12e-18   NR ETO28118.1 46433 g622223 i0 41.7 2.04280155642023 96 39 92.2 1 257 21 166 261 ETO28118.1 hypothetical protein RFI_09014, partial [Reticulomyxa filosa] diamond 525 87.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30583676 30583676 PRJNA556992_P_NODE_1160073_length_199_cov_5.896825_g1157882_i0 PRJNA556992 1160073 199 5.896825 11.73468175 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 50.4 5.23e-6   NR ETO26166.1 46433 g1157882 i0 48.7 0.587939698492462 39 20 58.8 0 146 30 22 60 ETO26166.1 hypothetical protein RFI_10975 [Reticulomyxa filosa] diamond 117 50.4 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32481670 32481670 PRJNA556992_P_NODE_719819_length_250_cov_1.666667_g717630_i0 PRJNA556992 719819 250 1.666667 4.1666675 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 78.2 1.34e-14   NR ETO24307.1 46433 g717630 i0 45.1 0.984 82 45 98.4 0 3 248 138 219 ETO24307.1 hypothetical protein RFI_12848, partial [Reticulomyxa filosa] diamond 246 78.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;