RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA556992" and tax_phylum = "Candidatus Berkelbacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28531326 28531326 PRJNA556992_P_NODE_259747_length_300_cov_9.233480_g257558_i0 PRJNA556992 259747 300 9.23348 27.70044 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 58.9 1.41e-7   NR MBI4948322.1 2053521 g257558 i0 36.7 0.9 90 49 84 4 252 1 54 141 MBI4948322.1 hypothetical protein [Candidatus Berkelbacteria bacterium] diamond 270 58.9 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium
32196828 32196828 PRJNA556992_P_NODE_751458_length_248_cov_3.342857_g749269_i0 PRJNA556992 751458 248 3.342857 8.29028536 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 52.8 1.14e-5   NR MEI6040006.1 2053521 g749269 i0 66.7 1.41532258064516 39 13 47.2 0 127 243 4 42 MEI6040006.1 chaperonin GroEL [Candidatus Berkelbacteria bacterium] diamond 351 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;