RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA556992" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA556992 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1797551 1797551 PRJNA556992_P_NODE_1011562_length_229_cov_3.621795_g1009372_i0 PRJNA556992 1011562 229 3.621795 8.29391055 Red clover bacilliform virus 1214920 Viruses Viruses 165 2.52e-36   NTclustered gi|397770868|gb|JX069965.1| 1214920 g1009372 i0 81.726 0.982532751091703 197 36 86 0 29 225 16 212 Red clover bacilliform virus isolate 12/13 polyprotein gene, partial cds blastn 225 165 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Red clover bacilliform virus
27046743 27046743 PRJNA556992_P_NODE_1095722_length_213_cov_14.142857_g1093531_i0 PRJNA556992 1095722 213 14.142857 30.12428541 Black Syrian hamster retrovirus 2594425 Viruses Viruses 102 1.86e-23   NR QDK64674.1 2594425 g1093531 i0 67.6 1 71 23 100 0 213 1 104 174 QDK64674.1 pro-pol, partial [Black Syrian hamster retrovirus] diamond 213 102 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Black Syrian hamster retrovirus
28436615 28436615 PRJNA556992_P_NODE_339466_length_283_cov_2.690476_g337277_i0 PRJNA556992 339466 283 2.690476 7.61404708 Banana streak UI virus 1016855 Viruses Viruses 49.7 2.29e-4   NR YP_004442827.1 1016855 g337277 i0 57.6 0.890459363957597 33 14 35 0 225 127 1737 1769 YP_004442827.1 polyprotein [Banana streak UI virus] diamond 252 49.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus zetavirgamusae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;