RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA556992", tax_clade = "sulfur-oxidizing symbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 1 ✖

bioproject 1

  • PRJNA556992 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15834689 15834689 PRJNA556992_P_NODE_695153_length_251_cov_2.775281_g692964_i0 PRJNA556992 695153 251 2.775281 6.96595531 Candidatus Vondammii sp. HM_W22 2687299 Bacteria Bacteria 87.9 6.24e-13   NTclustered gi|2666924061|gb|CP099567.1| 2687299 g692964 i0 88.732 2.70119521912351 71 8 28 0 7 77 1502251 1502181 Candidatus Vondammii sp. HM_W22 chromosome, complete genome blastn 678 87.9 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria     Candidatus Vondammii Candidatus Vondammii sp. HM_W22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;