RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA556992", tax_clade = "SAR86 cluster" and tax_kingdom = "Pseudomonadati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 4 ✖

tax_clade 1

  • SAR86 cluster · 4 ✖

bioproject 1

  • PRJNA556992 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6911970 6911970 PRJNA556992_P_NODE_862526_length_242_cov_7.840237_g860336_i0 PRJNA556992 862526 242 7.840237 18.97337354 SAR86 cluster bacterium 2030880 Bacteria Bacteria 100 7.68e-17   NTclustered gi|2252317560|gb|CP097973.1| 2030880 g860336 i0 92.857 2.02479338842975 70 3 29 2 85 153 861854 861922 SAR86 cluster bacterium isolate D2474-A1-1 chromosome, complete genome blastn 490 100 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium
10733528 10733528 PRJNA556992_P_NODE_488369_length_268_cov_2.230769_g486180_i0 PRJNA556992 488369 268 2.230769 5.97846092 Bacteria 2 Bacteria Bacteria 122 1.1000000000000001e-30   NR EJP71660.1 1123866 g486180 i0 67 2.86567164179104 88 29 98.5 0 5 268 52 139 EJP71660.1 MAG: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [SAR86 cluster bacterium SAR86A] diamond 768 122 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium SAR86A
27394701 27394701 PRJNA556992_P_NODE_28703_length_642_cov_9.516696_g26620_i0 PRJNA556992 28703 642 9.516696 61.09718832 SAR86 cluster bacterium 2030880 Bacteria Bacteria 206 1.61e-61   NR URQ65759.1 2030880 g26620 i0 59.1 1.52336448598131 164 67 76.6 0 151 642 1 164 URQ65759.1 FAD-dependent oxidoreductase [SAR86 cluster bacterium] diamond 978 206 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium
31690074 31690074 PRJNA556992_P_NODE_10177_length_1043_cov_3.001031_g8730_i0 PRJNA556992 10177 1043 3.001031 31.30075333 SAR86 cluster bacterium 2030880 Bacteria Bacteria 71.2 9.74e-10   NR PCJ20775.1 2030880 g8730 i0 34.4 0.37679769894535 131 52 27.9 3 1042 752 165 295 PCJ20775.1 MAG: hypothetical protein COA96_15715 [SAR86 cluster bacterium] diamond 393 71.2 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;