RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA556992" and tax_clade = "SAR202 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 2 ✖

bioproject 1

  • PRJNA556992 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28103415 28103415 PRJNA556992_P_NODE_589765_length_259_cov_6.913978_g587576_i0 PRJNA556992 589765 259 6.913978 17.90720302 SAR202 cluster 648176 Bacteria Bacteria 82.8 9.53e-18   NR KAA1295589.1 2030829 g587576 i0 77.8 2.62934362934363 45 10 52.1 0 254 120 114 158 KAA1295589.1 MAG: S-adenosylmethionine-dependent methyltransferase [SAR202 cluster bacterium] diamond 681 82.8 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
32796577 32796577 PRJNA556992_P_NODE_797460_length_246_cov_1.583815_g795270_i0 PRJNA556992 797460 246 1.583815 3.8961849 SAR202 cluster bacterium 2030829 Bacteria Bacteria 76.6 2.88e-14   NR MDP7195996.1 2030829 g795270 i0 51.3 0.975609756097561 80 38 97.6 1 1 240 238 316 MDP7195996.1 SPASM domain-containing protein [SAR202 cluster bacterium] diamond 240 76.6 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;