RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA556992", tax_clade = "OM43 clade" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 1 ✖

tax_clade 1

  • OM43 clade · 1 ✖

bioproject 1

  • PRJNA556992 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27647299 27647299 PRJNA556992_P_NODE_266244_length_298_cov_1.782222_g264055_i0 PRJNA556992 266244 298 1.782222 5.31102156 Methylophilales bacterium HTCC2181 383631 Bacteria Bacteria 68.2 2.24e-12   NR EAV46407.1 383631 g264055 i0 34.8 1.88255033557047 92 59 91.6 1 292 20 1 92 EAV46407.1 Possible Sigma 54 modulation protein/ribosomal protein S30EA [Methylophilales bacterium HTCC2181] diamond 561 68.2 1 Bacteria OM43 clade Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales     Methylophilales bacterium HTCC2181

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;