RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA556992", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 12 ✖

tax_clade 1

  • Metamonada · 12 ✖

bioproject 1

  • PRJNA556992 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
527375 527375 PRJNA556992_P_NODE_334081_length_284_cov_1.715640_g331892_i0 PRJNA556992 334081 284 1.71564 4.8724176 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.026   NTclustered gi|2319646654|ref|XM_001321867.2| 412133 g331892 i0 100 0.197183098591549 28 0 10 0 2 29 1636 1663 Trichomonas vaginalis G3 spectrin binding (TVAGG3_0311940), partial mRNA blastn 56 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
9459811 9459811 PRJNA556992_P_NODE_649708_length_255_cov_1.565934_g647519_i0 PRJNA556992 649708 255 1.565934 3.9931317 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 455 1.51e-123   NTclustered gi|2319615589|ref|XR_007835968.1| 412133 g647519 i0 98.824 76.8941176470588 255 3 100 0 1 255 2160 2414 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0033920), rRNA blastn 19608 455 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
15828142 15828142 PRJNA556992_P_NODE_199433_length_327_cov_3.783465_g197245_i0 PRJNA556992 199433 327 3.783465 12.37193055 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 56.5 0.002   NTclustered gi|2794861155|ref|XM_067921658.1| 135588 g197245 i0 100 0.0917431192660551 30 0 9 0 218 247 1016 1045 Histomonas meleagridis Ubiquitin-like modifier-activating enzyme 1 (GO595_000811), partial mRNA blastn 30 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
26793740 26793740 PRJNA556992_P_NODE_389801_length_277_cov_7.299020_g387612_i0 PRJNA556992 389801 277 7.29902 20.2182854 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 45.8 0.00366   NR XP_001305731.1 412133 g387612 i0 51.4 0.779783393501805 37 18 40.1 0 114 4 34 70 XP_001305731.1 Rab GTPase binding [Trichomonas vaginalis G3] diamond 216 45.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
26903180 26903180 PRJNA556992_P_NODE_156361_length_353_cov_27.457143_g154173_i0 PRJNA556992 156361 353 27.457143 96.92371479 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.5 9.9e-6   NR XP_001317694.2 412133 g154173 i0 47.6 2.69405099150142 63 30 51 2 71 250 112 174 XP_001317694.2 Golgi to endosome transport [Trichomonas vaginalis G3] diamond 951 53.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27472233 27472233 PRJNA556992_P_NODE_777503_length_247_cov_1.695402_g775313_i0 PRJNA556992 777503 247 1.695402 4.18764294 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.4 3.77e-9   NR XP_001303342.1 412133 g775313 i0 44.2 5.52631578947368 77 40 93.5 2 17 247 32 105 XP_001303342.1 locomotory exploration behavior [Trichomonas vaginalis G3] diamond 1365 62.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27819652 27819652 PRJNA556992_P_NODE_945124_length_236_cov_3.098160_g942934_i0 PRJNA556992 945124 236 3.09816 7.3116576 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 84 9.37e-17   NR XP_001301222.1 412133 g942934 i0 52.6 7.77966101694915 78 36 99.2 1 235 2 177 253 XP_001301222.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 1836 84 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29604537 29604537 PRJNA556992_P_NODE_624190_length_257_cov_1.619565_g622001_i0 PRJNA556992 624190 257 1.619565 4.16228205 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 46.2 0.0018600000000000001   NR XP_068362444.1 1144522 g622001 i0 36.4 0.642023346303502 55 34 64.2 1 217 53 153 206 XP_068362444.1 uncharacterized protein TRFO_21776 [Tritrichomonas foetus] diamond 165 46.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30173278 30173278 PRJNA556992_P_NODE_559712_length_262_cov_2.121693_g557523_i0 PRJNA556992 559712 262 2.121693 5.55883566 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 82 8.01e-17   NR XP_068351542.1 1144522 g557523 i0 50.7 1.7175572519084 75 36 84.7 1 1 222 111 185 XP_068351542.1 small GTP-binding protein [Tritrichomonas foetus] diamond 450 82 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30173316 30173316 PRJNA556992_P_NODE_631532_length_256_cov_2.857923_g629343_i0 PRJNA556992 631532 256 2.857923 7.31628288 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 58.9 3.19e-8   NR XP_068354630.1 1144522 g629343 i0 45.9 2.25 61 33 71.5 0 1 183 95 155 XP_068354630.1 Ras family protein [Tritrichomonas foetus] diamond 576 58.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30173439 30173439 PRJNA556992_P_NODE_841632_length_244_cov_0.900585_g839442_i0 PRJNA556992 841632 244 0.900585 2.1974274 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 49.3 1.81e-4   NR XP_001302511.1 412133 g839442 i0 35 0.983606557377049 80 51 98.4 1 242 3 75 153 XP_001302511.1 regulation of response to stimulus [Trichomonas vaginalis G3] diamond 240 49.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32733979 32733979 PRJNA556992_P_NODE_771040_length_247_cov_3.247126_g768850_i0 PRJNA556992 771040 247 3.247126 8.02040122 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 50.4 7.16e-5   NR XP_067778206.1 135588 g768850 i0 71 0.376518218623482 31 9 37.7 0 154 246 44 74 XP_067778206.1 CMGC family protein kinase [Histomonas meleagridis] diamond 93 50.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;