RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA556992" and tax_clade = "DHVE2 group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • DHVE2 group · 1 ✖

bioproject 1

  • PRJNA556992 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4955859 4955859 PRJNA556992_P_NODE_870744_length_242_cov_2.254438_g868554_i0 PRJNA556992 870744 242 2.254438 5.45573996 Candidatus Aciduliprofundum 379546 Archaea Archaea 165 2.68e-36   NTclustered gi|470485990|ref|NR_076728.1| 379547 g868554 i0 82.143 27.8801652892562 196 32 80 3 25 218 2441 2247 Aciduliprofundum boonei strain T469 23S ribosomal RNA gene, complete sequence blastn 6747 165 1 Archaea DHVE2 group Methanobacteriati Thermoplasmatota       Candidatus Aciduliprofundum Candidatus Aciduliprofundum boonei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;