RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA556992" and tax_clade = "Candidatus Thermofonsia Clade 3"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Candidatus Thermofonsia Clade 3 · 3 ✖

bioproject 1

  • PRJNA556992 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9452156 9452156 PRJNA556992_P_NODE_1154368_length_200_cov_7.732283_g1152177_i0 PRJNA556992 1154368 200 7.732283 15.464566 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 93.5 1.02e-14   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g1152177 i0 89.189 0.37 74 8 37 0 4 77 3630981 3630908 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 74 93.5 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
29145914 29145914 PRJNA556992_P_NODE_98989_length_406_cov_4.012012_g96805_i0 PRJNA556992 98989 406 4.012012 16.28876872 Candidatus Thermofonsia Clade 3 2364209 Bacteria Bacteria 272 1.23e-86   NR WP_169239966.1 2704250 g96805 i0 100 1.99507389162562 135 0 99.8 0 1 405 153 287 WP_169239966.1 hypothetical protein, partial [Candidatus Roseilinea sp. NK_OTU-006] diamond 810 272 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp. NK_OTU-006
31089620 31089620 PRJNA556992_P_NODE_527595_length_265_cov_1.401042_g525406_i0 PRJNA556992 527595 265 1.401042 3.7127613 Candidatus Thermofonsia Clade 3 bacterium 2364212 Bacteria Bacteria 96.7 4.09e-24   NR PJF46448.1 2364212 g525406 i0 60.3 0.883018867924528 78 29 88.3 1 255 22 1 76 PJF46448.1 MAG: rep protein [Candidatus Thermofonsia Clade 3 bacterium] diamond 234 96.7 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia       Candidatus Thermofonsia Clade 3 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;