RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA556992", tax_clade = "BD1-7 clade" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 2 ✖

tax_clade 1

  • BD1-7 clade · 2 ✖

bioproject 1

  • PRJNA556992 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26839957 26839957 PRJNA556992_P_NODE_1106681_length_211_cov_5.072464_g1104490_i0 PRJNA556992 1106681 211 5.072464 10.70289904 Pseudomonadati 3379134 Bacteria Bacteria 50.1 6.23e-5   NR CAA0080637.1 2029982 g1104490 i0 55.8 2.53080568720379 43 19 61.1 0 208 80 302 344 CAA0080637.1 Uncharacterised protein [BD1-7 clade bacterium] diamond 534 50.1 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   BD1-7 clade bacterium
31325123 31325123 PRJNA556992_P_NODE_316735_length_286_cov_2.737089_g314546_i0 PRJNA556992 316735 286 2.737089 7.82807454 Gammaproteobacteria 1236 Bacteria Bacteria 87 1.73e-17   NR CAA0123060.1 2029982 g314546 i0 97.7 4.06993006993007 43 1 45.1 0 1 129 1027 1069 CAA0123060.1 Type-1 restriction enzyme R protein [BD1-7 clade bacterium] diamond 1164 87.8 0.990888382687927 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   BD1-7 clade bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;