RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA556992", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA556992 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6904341 6904341 PRJNA556992_P_NODE_269406_length_296_cov_9.784753_g267217_i0 PRJNA556992 269406 296 9.784753 28.96286888 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 547 2.8799999999999986e-151   NTclustered gi|300078496|gb|GU001158.1| 5778 g267217 i0 100 32.3074324324324 296 0 100 0 1 296 1215 1510 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9563 547 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8175139 8175139 PRJNA556992_P_NODE_1048507_length_225_cov_5.111842_g1046317_i0 PRJNA556992 1048507 225 5.111842 11.5016445 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 267 6.559999999999999e-67   NTclustered gi|909719645|gb|KT185625.1| 5778 g1046317 i0 88.688 0.982222222222222 221 21 98 3 1 221 489 705 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 221 267 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9458463 9458463 PRJNA556992_P_NODE_537708_length_264_cov_1.612565_g535519_i0 PRJNA556992 537708 264 1.612565 4.2571716 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 459 1.22e-124   NTclustered gi|909719645|gb|KT185625.1| 5778 g535519 i0 98.099 26.5871212121212 263 5 99 0 1 263 6757 7019 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 7019 459 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10738495 10738495 PRJNA556992_P_NODE_89209_length_419_cov_6.104046_g87027_i0 PRJNA556992 89209 419 6.104046 25.57595274 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 728 0   NTclustered gi|54306228|gb|AY626163.1| 297386 g87027 i0 98.091 77.7923627684964 419 7 100 1 1 419 600 1017 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 32595 728 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
17110303 17110303 PRJNA556992_P_NODE_750654_length_248_cov_3.708571_g748465_i0 PRJNA556992 750654 248 3.708571 9.19725608 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 195 3.52e-45   NTclustered gi|292559443|ref|NC_013986.1| 5778 g748465 i0 81.148 59.1048387096774 244 45 98 1 4 247 27275 27517 Hartmannella vermiformis mitochondrion, complete genome blastn 14658 195 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19661949 19661949 PRJNA556992_P_NODE_998116_length_230_cov_7.713376_g995926_i0 PRJNA556992 998116 230 7.713376 17.7407648 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 403 4.92e-108   NTclustered gi|54306228|gb|AY626163.1| 297386 g995926 i0 98.253 62.5608695652174 229 4 99 0 2 230 355 127 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 14389 403 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
22803044 22803044 PRJNA556992_P_NODE_33678_length_600_cov_1.943074_g31561_i0 PRJNA556992 33678 600 1.943074 11.658444 Vermamoeba 1260114 Tubulinea other_Eukaryota 1090 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g31561 i0 99.499 60.31 599 3 99 0 2 600 2926 2328 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 36186 1090 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24752831 24752831 PRJNA556992_P_NODE_279900_length_293_cov_1.845455_g277711_i0 PRJNA556992 279900 293 1.845455 5.40718315 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 157 1.0399999999999997e-42   NR AKT93967.1 5778 g277711 i0 89.8 1.80204778156997 88 9 90.1 0 1 264 395 482 AKT93967.1 NADH dehydrogenase subunit 5 [Vermamoeba vermiformis] diamond 528 157 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24760461 24760461 PRJNA556992_P_NODE_882280_length_241_cov_6.648810_g880090_i0 PRJNA556992 882280 241 6.64881 16.0236321 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 99 2.75e-16   NTclustered gi|909719647|gb|KT185627.1| 5778 g880090 i0 80.8 0.518672199170125 125 24 52 0 18 142 41420 41544 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 125 99 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31722204 31722204 PRJNA556992_P_NODE_866237_length_242_cov_3.502959_g864047_i0 PRJNA556992 866237 242 3.502959 8.47716078 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 120 5.55e-32   NR ABD46545.1 5778 g864047 i0 96.6 0.731404958677686 59 2 73.1 0 65 241 138 196 ABD46545.1 aldehyde dehydrogenase, partial [Vermamoeba vermiformis] diamond 177 120 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32133630 32133630 PRJNA556992_P_NODE_772638_length_247_cov_2.741379_g770448_i0 PRJNA556992 772638 247 2.741379 6.77120613 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 145 1.03e-42   NR AKT93944.1 5778 g770448 i0 84.1 1.9919028340081 82 13 99.6 0 247 2 33 114 AKT93944.1 ribosomal protein S8 [Vermamoeba vermiformis] diamond 492 145 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;