RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA556842" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA556842 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4348923 4348923 PRJNA556842_P_NODE_16984_length_157_cov_0.966667_g16479_i0 PRJNA556842 16984 157 0.966667 1.51766719 Phytopythium vexans 907947 SAR_Eukaryotes SAR_Eukaryotes 176 7.37e-40   NTclustered gi|829497382|dbj|AB856793.1| 907947 g16479 i0 87.662 28.6369426751592 154 15 97 3 5 156 60 211 Phytopythium vexans HSP90 gene for heat shock protein 90, partial cds, isolate: 2D111 blastn 4496 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
28956242 28956242 PRJNA556842_P_NODE_13228_length_191_cov_1.000000_g12723_i0 PRJNA556842 13228 191 1 1.91 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 60.1 1.42e-8   NR KAF1324593.1 82926 g12723 i0 54 2.93717277486911 63 28 97.4 1 190 5 275 337 KAF1324593.1 V-type h translocating pyrophosphatase, partial [Globisporangium splendens] diamond 561 60.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
29572789 29572789 PRJNA556842_P_NODE_14450_length_178_cov_1.063830_g13945_i0 PRJNA556842 14450 178 1.06383 1.8936174 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 48.5 1.43e-4   NR KAH9086397.1 100861 g13945 i0 62.2 0.623595505617977 37 14 62.4 0 175 65 430 466 KAH9086397.1 hypothetical protein LEN26_020160 [Aphanomyces euteiches] diamond 111 48.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;