RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA556842" and tax_phylum = "Candidatus Ratteibacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Ratteibacteria · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA556842 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26888645 26888645 PRJNA556842_P_NODE_7661_length_301_cov_4.954545_g7157_i0 PRJNA556842 7661 301 4.954545 14.91318045 Candidatus Ratteibacteria bacterium 3018269 Bacteria Bacteria 43.1 0.0487   NR HRR96318.1 3018269 g7157 i0 24.2 0.98671096345515 99 75 98.7 0 4 300 119 217 HRR96318.1 peptide chain release factor N(5)-glutamine methyltransferase [Candidatus Ratteibacteria bacterium] diamond 297 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Ratteibacteria         Candidatus Ratteibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;