RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA556842", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA556842 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8777080 8777080 PRJNA556842_P_NODE_12687_length_198_cov_1.440994_g12182_i0 PRJNA556842 12687 198 1.440994 2.85316812 Micavibrio 213485 Bacteria Bacteria 250 5.67e-62   NTclustered gi|470487404|ref|NR_076816.1| 349221 g12182 i0 89.744 136.378787878788 195 20 98 0 1 195 2519 2713 Micavibrio aeruginosavorus strain ARL-13 23S ribosomal RNA gene, complete sequence blastn 27003 250 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
20250683 20250683 PRJNA556842_P_NODE_14516_length_177_cov_1.914286_g14011_i0 PRJNA556842 14516 177 1.914286 3.38828622 Bdellovibrio 958 Bacteria Bacteria 315 1.73e-81   NTclustered gi|2800924434|gb|CP168967.1| 959 g14011 i0 98.864 86.180790960452 176 2 99 0 2 177 784571 784396 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 15254 315 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;