RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA556842", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA556842 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3675478 3675478 PRJNA556842_P_NODE_13783_length_184_cov_2.326531_g13278_i0 PRJNA556842 13783 184 2.326531 4.28081704 Hymenostomatida 31277 SAR_Eukaryotes SAR_Eukaryotes 307 3.0300000000000004e-79   NTclustered gi|2624665746|gb|OR878271.1| 210825 g13278 i0 96.739 83.9891304347826 184 6 100 0 1 184 986 803 Glaucoma scintillans isolate LLH20220320 large subunit ribosomal RNA gene, partial sequence blastn 15454 307 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Glaucomidae Glaucoma Glaucoma scintillans
9450202 9450202 PRJNA556842_P_NODE_2388_length_650_cov_3.634584_g1967_i0 PRJNA556842 2388 650 3.634584 23.624796 Paramecium gigas 2709424 SAR_Eukaryotes SAR_Eukaryotes 95.3 1.06e-14   NTclustered gi|2120474459|ref|NC_058286.1| 2709424 g1967 i0 88.608 27.4246153846154 79 8 12 1 382 459 1843 1921 Paramecium gigas mitochondrion, complete genome blastn 17826 95.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium gigas
24076120 24076120 PRJNA556842_P_NODE_16939_length_157_cov_1.508333_g16434_i0 PRJNA556842 16939 157 1.508333 2.36808281 Turaniellidae 291295 SAR_Eukaryotes SAR_Eukaryotes 287 3.26e-73   NTclustered gi|10931|emb|X56532.1| 5927 g16434 i0 100 98.5668789808917 155 0 99 0 3 157 555 401 C.campylum small subunit ribosomal RNA gene blastn 15475 287 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Turaniellidae Dexiostoma Dexiostoma campyla

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;