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contig_metadata

6 rows where bioproject = "PRJNA556842", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA556842 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1124146 1124146 PRJNA556842_P_NODE_10881_length_226_cov_1.354497_g10376_i0 PRJNA556842 10881 226 1.354497 3.06116322 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 368 1.76e-97   NTclustered gi|2127884593|ref|NC_058877.1| 83372 g10376 i0 96.018 199.044247787611 226 9 100 0 1 226 14939 14714 Thalassiosira nordenskioeldii isolate CNS00052 chloroplast, complete genome blastn 44984 368 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira nordenskioeldii
3072718 3072718 PRJNA556842_P_NODE_13623_length_186_cov_1.697987_g13118_i0 PRJNA556842 13623 186 1.697987 3.15825582 Eucampia zodiacus 444606 SAR_Eukaryotes SAR_Eukaryotes 294 2.39e-75   NTclustered gi|2091535207|ref|NC_057645.1| 444606 g13118 i0 96.61 186.516129032258 177 6 95 0 1 177 17811 17635 Eucampia zodiacus strain CNS00061 chloroplast, complete genome blastn 34692 294 1 Eukaryota Sar   Bacillariophyta Mediophyceae Hemiaulales Hemiaulaceae Eucampia Eucampia zodiacus
10052587 10052587 PRJNA556842_P_NODE_9428_length_254_cov_3.161290_g8923_i0 PRJNA556842 9428 254 3.16129 8.0296766 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 436 5.45e-118   NTclustered gi|2862228899|gb|PQ645533.1| 265540 g8923 i0 97.638 100.03937007874 254 6 100 0 1 254 3532 3785 Minidiscus trioculatus isolate AGSB0407 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25410 436 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Minidiscus Minidiscus trioculatus
10725952 10725952 PRJNA556842_P_NODE_10709_length_229_cov_2.208333_g10204_i0 PRJNA556842 10709 229 2.208333 5.05708257 Licmophora juergensii 210598 SAR_Eukaryotes SAR_Eukaryotes 396 8.1899999999999985e-106   NTclustered gi|2862228907|gb|PQ645541.1| 210598 g10204 i0 97.817 100.427947598253 229 5 100 0 1 229 2993 3221 Licmophora juergensii isolate AGSB0420 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22998 396 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Licmophorales Licmophoraceae Licmophora Licmophora juergensii
22198671 22198671 PRJNA556842_P_NODE_10258_length_238_cov_1.174129_g9753_i0 PRJNA556842 10258 238 1.174129 2.79442702 Navicula avium 2018708 SAR_Eukaryotes SAR_Eukaryotes 303 5.35e-78   NTclustered gi|2202538973|gb|OM891879.1| 2018708 g9753 i0 89.958 93.7436974789916 239 18 100 4 1 238 4042 3809 Haslea avium small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22311 303 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula avium
28040443 28040443 PRJNA556842_P_NODE_17505_length_153_cov_1.318966_g17000_i0 PRJNA556842 17505 153 1.318966 2.01801798 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 72 2.79e-14   NR AAB70105.1 2843 g17000 i0 94.1 8.72549019607843 34 2 66.7 0 151 50 112 145 AAB70105.1 fucoxanthin-chlorophyll a/c light-harvesting protein, partial [Skeletonema costatum] diamond 1335 72.4 0.994475138121547 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema costatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;