RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA556842", tax_clade = "PVC group" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA556842 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1124147 1124147 PRJNA556842_P_NODE_10941_length_225_cov_1.010638_g10436_i0 PRJNA556842 10941 225 1.010638 2.2739355 Phycisphaerae 666505 Bacteria Bacteria 355 1.36e-93   NTclustered gi|2874253847|emb|OY969903.1| 904075 g10436 i0 95.89 213.4 219 9 97 0 7 225 1831264 1831046 MAG: uncultured Phycisphaerales bacterium isolate MFD01213.bin.c.1 genome assembly, chromosome: 1 blastn 48015 355 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     uncultured Phycisphaerales bacterium
5625676 5625676 PRJNA556842_P_NODE_13125_length_192_cov_1.729032_g12620_i0 PRJNA556842 13125 192 1.729032 3.31974144 Chthoniobacter sp. 2510640 Bacteria Bacteria 120 2.39e-30   NR MDR3405335.1 2510640 g12620 i0 90.5 0.984375 63 6 98.4 0 3 191 372 434 MDR3405335.1 translation elongation factor EF1A family protein [Chthoniobacter sp.] diamond 189 120 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
32607434 32607434 PRJNA556842_P_NODE_14660_length_176_cov_1.115108_g14155_i0 PRJNA556842 14660 176 1.115108 1.96259008 Planctomycetota bacterium 2026780 Bacteria Bacteria 117 6.77e-32   NR MCP4708211.1 2026780 g14155 i0 100 0.988636363636364 58 0 98.9 0 3 176 94 151 MCP4708211.1 DUF4329 domain-containing protein [Planctomycetota bacterium] diamond 174 117 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;