RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA554794", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA554794 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28419412 28419412 PRJNA554794_P_NODE_13406_length_246_cov_1.680203_g9477_i0 PRJNA554794 13406 246 1.680203 4.13329938 Bacteria 2 Bacteria Bacteria 113 6.1200000000000005e-27   NR MCK9170231.1 166 g9477 i0 60.5 76.0487804878049 81 32 98.8 0 2 244 254 334 MCK9170231.1 glutamine synthetase III [Treponema sp.] diamond 18708 114 0.991228070175439 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
29509682 29509682 PRJNA554794_P_NODE_23830_length_163_cov_0.894737_g19901_i0 PRJNA554794 23830 163 0.894737 1.45842131 Treponema sp. Marseille-Q4523 2810610 Bacteria Bacteria 112 4.39e-27   NR WP_205076109.1 2810610 g19901 i0 98.1 0.993865030674847 54 1 99.4 0 162 1 327 380 WP_205076109.1 L-fucose isomerase [Treponema sp. Marseille-Q4523] diamond 162 112 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. Marseille-Q4523

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;