RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA554794" and tax_phylum = "Peploviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Peploviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA554794 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4951718 4951718 PRJNA554794_P_NODE_24084_length_162_cov_5.283186_g20155_i0 PRJNA554794 24084 162 5.283186 8.55876132 root 1 Root_unresolved Root_unresolved 87.9 3.7e-13   NTclustered gi|823077642|gb|KR534209.1| 10359 g20155 i0 98.039 32.1111111111111 51 0 31 1 82 131 175264 175214 Human herpesvirus 5 strain JER4755, complete genome blastn 5202 87.9 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus humanbeta5
15151529 15151529 PRJNA554794_P_NODE_19512_length_208_cov_3.773585_g15583_i0 PRJNA554794 19512 208 3.773585 7.8490568 root 1 Root_unresolved Root_unresolved 87.9 4.99e-13   NTclustered gi|823077642|gb|KR534209.1| 10359 g15583 i0 98.039 25.0096153846154 51 0 24 1 128 177 175264 175214 Human herpesvirus 5 strain JER4755, complete genome blastn 5202 87.9 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus humanbeta5

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;