RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA554794" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA554794 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28657391 28657391 PRJNA554794_P_NODE_24027_length_163_cov_0.877193_g20098_i0 PRJNA554794 24027 163 0.877193 1.42982459 Chloroflexota bacterium 2026724 Bacteria Bacteria 90.5 1.9e-19   NR MEW6505710.1 2026724 g20098 i0 97.8 0.828220858895706 45 1 82.8 0 28 162 1 45 MEW6505710.1 hypothetical protein [Chloroflexota bacterium] diamond 135 90.5 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29951854 29951854 PRJNA554794_P_NODE_3031_length_1741_cov_1.404846_g1113_i0 PRJNA554794 3031 1741 1.404846 24.45836886 Chloroflexaceae bacterium 2562117 Bacteria Bacteria 136 8.479999999999998e-31   NR MCS6882727.1 2562117 g1113 i0 34.7 0.522113727742677 303 182 50 9 891 22 132 431 MCS6882727.1 DUF4397 domain-containing protein [Chloroflexaceae bacterium] diamond 909 136 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae   Chloroflexaceae bacterium
30773453 30773453 PRJNA554794_P_NODE_20554_length_192_cov_1.552448_g16625_i0 PRJNA554794 20554 192 1.552448 2.98070016 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 125 2.22e-33   NR MDO9332913.1 2026733 g16625 i0 92.1 0.984375 63 5 98.4 0 191 3 112 174 MDO9332913.1 EF-Tu/IF-2/RF-3 family GTPase [Dehalococcoidales bacterium] diamond 189 125 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;