RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA554794", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA554794 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4348018 4348018 PRJNA554794_P_NODE_19804_length_205_cov_1.044872_g15875_i0 PRJNA554794 19804 205 1.044872 2.1419876 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 104 2.18e-24   NR MCB0368368.1 2053517 g15875 i0 83.6 0.980487804878049 67 9 98 1 3 203 320 384 MCB0368368.1 hypothetical protein [Bdellovibrionales bacterium] diamond 201 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27520588 27520588 PRJNA554794_P_NODE_24563_length_161_cov_0.910714_g20634_i0 PRJNA554794 24563 161 0.910714 1.46624954 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 82.8 4.26e-19   NR HEY8278067.1 3034175 g20634 i0 84.1 0.819875776397516 44 7 82 0 28 159 12 55 HEY8278067.1 Smr/MutS family protein [Bdellovibrionota bacterium] diamond 132 82.8 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31532134 31532134 PRJNA554794_P_NODE_24236_length_162_cov_0.902655_g20307_i0 PRJNA554794 24236 162 0.902655 1.4623011 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 94.4 7.360000000000001e-21   NR MCB0370360.1 2053517 g20307 i0 84.9 1.96296296296296 53 8 98.1 0 1 159 241 293 MCB0370360.1 HAD-IC family P-type ATPase [Bdellovibrionales bacterium] diamond 318 94.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;