RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA554794", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA554794 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3674889 3674889 PRJNA554794_P_NODE_23983_length_163_cov_0.885965_g20054_i0 PRJNA554794 23983 163 0.885965 1.44412295 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 103 4.78e-24   NR MBA3441149.1 2283092 g20054 i0 92.6 0.993865030674847 54 4 99.4 0 163 2 625 678 MBA3441149.1 Tn3 family transposase [Pyrinomonadaceae bacterium] diamond 162 103 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
11999869 11999869 PRJNA554794_P_NODE_23130_length_165_cov_0.879310_g19201_i0 PRJNA554794 23130 165 0.87931 1.4508615 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 100 4.86e-17   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g19201 i0 92.754 0.418181818181818 69 5 42 0 1 69 6082258 6082326 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 69 100 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
23473380 23473380 PRJNA554794_P_NODE_22459_length_168_cov_1.436975_g18530_i0 PRJNA554794 22459 168 1.436975 2.414118 Geothrix sp. 21YS21S-2 3068893 Bacteria Bacteria 65.8 1.81e-6   NTclustered gi|2566094019|gb|CP132910.1| 3068893 g18530 i0 95.122 0.244047619047619 41 2 24 0 40 80 1463586 1463626 Geothrix sp. 21YS21S-2 chromosome, complete genome blastn 41 65.8 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-2
29320232 29320232 PRJNA554794_P_NODE_21789_length_176_cov_1.062992_g17860_i0 PRJNA554794 21789 176 1.062992 1.87086592 Terracidiphilus sp. 1964191 Bacteria Bacteria 45.1 3.38e-4   NR MDR3737750.1 1964191 g17860 i0 42.3 0.886363636363636 52 29 88.6 1 170 15 21 71 MDR3737750.1 hypothetical protein [Terracidiphilus sp.] diamond 156 45.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;