RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA554794", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26666453 26666453 PRJNA554794_P_NODE_11501_length_312_cov_0.916350_g7573_i0 PRJNA554794 11501 312 0.91635 2.859012 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 95.5 8.379999999999999e-23   NR KAJ8030924.1 206669 g7573 i0 52.1 1.80769230769231 94 44 89.4 1 283 5 1 94 KAJ8030924.1 Profilin-1A [Holothuria leucospilota] diamond 564 95.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
30155749 30155749 PRJNA554794_P_NODE_22052_length_173_cov_1.000000_g18123_i0 PRJNA554794 22052 173 1 1.73 Metazoa 33208 Echinodermata other_Eukaryota 61.6 3.1e-9   NR XP_030851015.1 7668 g18123 i0 57.6 2.02890173410405 59 23 98.8 2 171 1 151 209 XP_030851015.1 rhamnose-binding lectin-like [Strongylocentrotus purpuratus] diamond 351 62 0.993548387096774 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
30914459 30914459 PRJNA554794_P_NODE_13514_length_243_cov_0.989691_g9585_i0 PRJNA554794 13514 243 0.989691 2.40494913 Metazoa 33208 Echinodermata other_Eukaryota 70.1 4.24e-13   NR XP_038061284.1 46514 g9585 i0 50.7 3.55555555555556 75 32 86.4 1 214 5 6 80 XP_038061284.1 60S ribosomal protein L22-like [Patiria miniata] diamond 864 70.5 0.994326241134752 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;