RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA554794" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA554794 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4348025 4348025 PRJNA554794_P_NODE_20644_length_191_cov_0.802817_g16715_i0 PRJNA554794 20644 191 0.802817 1.53338047 Eukaryota 2759 Plants Plants 99.8 5.97e-25   NR KAK2075613.1 3111 g16715 i0 80.3 18.7696335078534 61 12 95.8 0 189 7 65 125 KAK2075613.1 60S ribosomal protein L26A [Prototheca wickerhamii] diamond 3585 99.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
8173647 8173647 PRJNA554794_P_NODE_14507_length_219_cov_1.241176_g10578_i0 PRJNA554794 14507 219 1.241176 2.71817544 Eukaryota 2759 Plants Plants 101 9.449999999999999e-25   NR XP_011401505.1 3075 g10578 i0 78.3 18.5753424657534 60 13 82.2 0 180 1 1 60 XP_011401505.1 60S ribosomal protein L19-2 [Auxenochlorella protothecoides] diamond 4068 102 0.990196078431373 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
8173702 8173702 PRJNA554794_P_NODE_24007_length_163_cov_0.885965_g20078_i0 PRJNA554794 24007 163 0.885965 1.44412295 Chlamydomonas reinhardtii 3055 Plants Plants 165 1.67e-36   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g20078 i0 86.577 12 149 20 91 0 1 149 780 632 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 1956 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15823697 15823697 PRJNA554794_P_NODE_22833_length_166_cov_0.871795_g18904_i0 PRJNA554794 22833 166 0.871795 1.4471797 Chlorella variabilis 554065 Plants Plants 65.8 1.79e-6   NTclustered gi|552838620|ref|XM_005849555.1| 554065 g18904 i0 97.368 5.7289156626506 38 1 23 0 4 41 147 110 Chlorella variabilis expressed protein (CHLNCDRAFT_143104) mRNA, partial cds blastn 951 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
16426049 16426049 PRJNA554794_P_NODE_12873_length_262_cov_1.276995_g8944_i0 PRJNA554794 12873 262 1.276995 3.3457269 Chlorellaceae 35461 Plants Plants 146 2.03e-38   NR PRW20811.1 3076 g8944 i0 79.3 9.89312977099237 87 18 99.6 0 1 261 196 282 PRW20811.1 Receptor of activated kinase C component of 40S small ribosomal subunit isoform C [Chlorella sorokiniana] diamond 2592 146 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
21525455 21525455 PRJNA554794_P_NODE_14057_length_229_cov_1.033333_g10128_i0 PRJNA554794 14057 229 1.033333 2.36633257 Eukaryota 2759 Plants Plants 85.9 2.97e-18   NR XP_011401579.1 3075 g10128 i0 82.4 6.23580786026201 51 9 66.8 0 1 153 199 249 XP_011401579.1 putative histone H2A variant 3 [Auxenochlorella protothecoides] diamond 1428 85.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
27836225 27836225 PRJNA554794_P_NODE_24804_length_161_cov_0.883929_g20875_i0 PRJNA554794 24804 161 0.883929 1.42312569 Micractinium conductrix 554055 Plants Plants 49.3 5.96e-5   NR PSC70200.1 554055 g20875 i0 52 2.79503105590062 50 23 91.3 1 2 148 683 732 PSC70200.1 pyruvate kinase [Micractinium conductrix] diamond 450 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium conductrix
29983470 29983470 PRJNA554794_P_NODE_22851_length_166_cov_0.871795_g18922_i0 PRJNA554794 22851 166 0.871795 1.4471797 Chlamydomonas eustigma 1157962 Plants Plants 41.2 0.0473   NR GAX79429.1 1157962 g18922 i0 64 0.451807228915663 25 9 45.2 0 25 99 174 198 GAX79429.1 hypothetical protein CEUSTIGMA_g6870.t1 [Chlamydomonas eustigma] diamond 75 41.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
30046461 30046461 PRJNA554794_P_NODE_13611_length_241_cov_0.979167_g9682_i0 PRJNA554794 13611 241 0.979167 2.35979247 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 55.8 4.21e-7   NR KAF6263591.1 2650976 g9682 i0 60.5 0.473029045643154 38 15 47.3 0 41 154 3 40 KAF6263591.1 hypothetical protein COO60DRAFT_1624524 [Scenedesmus sp. NREL 46B-D3] diamond 114 55.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;