RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA554794", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28120490 28120490 PRJNA554794_P_NODE_13745_length_237_cov_1.845745_g9816_i0 PRJNA554794 13745 237 1.845745 4.37441565 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 109 5.74e-28   NR KAF4673217.1 330153 g9816 i0 71.4 1.94936708860759 77 22 97.5 0 235 5 64 140 KAF4673217.1 60S ribosomal protein L18 [Perkinsus chesapeaki] diamond 462 109 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
29446459 29446459 PRJNA554794_P_NODE_23090_length_165_cov_1.043103_g19161_i0 PRJNA554794 23090 165 1.043103 1.72111995 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 89 1.94e-19   NR XP_002774056.1 423536 g19161 i0 72.2 1.96363636363636 54 15 98.2 0 3 164 180 233 XP_002774056.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 324 89 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;