RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA554794", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA554794 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3071857 3071857 PRJNA554794_P_NODE_20983_length_186_cov_1.080292_g17054_i0 PRJNA554794 20983 186 1.080292 2.00934312 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 169 1.5099999999999998e-37   NTclustered gi|62910949|gb|AY925001.1| 5778 g17054 i0 97 0.763440860215054 100 3 54 0 87 186 1 100 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 142 169 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20923098 20923098 PRJNA554794_P_NODE_21617_length_178_cov_0.914729_g17688_i0 PRJNA554794 21617 178 0.914729 1.62821762 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 296 6.3e-76   NTclustered gi|62910949|gb|AY925001.1| 5778 g17688 i0 96.629 1.56179775280899 178 6 100 0 1 178 455 278 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 278 296 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24747117 24747117 PRJNA554794_P_NODE_13420_length_246_cov_0.746193_g9491_i0 PRJNA554794 13420 246 0.746193 1.83563478 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 416 6.839999999999999e-112   NTclustered gi|62910949|gb|AY925001.1| 5778 g9491 i0 97.154 2.34146341463415 246 7 100 0 1 246 731 486 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 576 416 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;