RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA554794", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA554794 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10725093 10725093 PRJNA554794_P_NODE_21229_length_183_cov_0.820896_g17300_i0 PRJNA554794 21229 183 0.820896 1.50223968 Vannella samoroda 2591203 Discosea other_Eukaryota 233 5.19e-57   NTclustered gi|1768465994|gb|MK992744.1| 2591203 g17300 i0 92.593 96.6010928961749 162 12 89 0 22 183 788 627 Vannella samoroda strain RC CCMAm 0457 clone 2 actin gene, partial cds blastn 17678 233 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella samoroda
17098482 17098482 PRJNA554794_P_NODE_13894_length_233_cov_0.994565_g9965_i0 PRJNA554794 13894 233 0.994565 2.31733645 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 85.1 4.19e-19   NR XP_004352877.1 1257118 g9965 i0 68.3 2.48497854077253 63 20 81.1 0 43 231 3 65 XP_004352877.1 ribosomal protein s24e, putative [Acanthamoeba castellanii str. Neff] diamond 579 85.9 0.990686845168801 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24747102 24747102 PRJNA554794_P_NODE_10320_length_376_cov_1.311927_g6431_i0 PRJNA554794 10320 376 1.311927 4.93284552 Ripella tribonemae 2047823 Discosea other_Eukaryota 606 6.089999999999998e-169   NTclustered gi|1269228471|gb|MF683596.1| 2047823 g6431 i0 97.479 92.4148936170213 357 5 94 4 23 376 676 1031 Ripella tribonemae clone 22.1.14 18S ribosomal RNA gene, partial sequence blastn 34748 606 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
26698243 26698243 PRJNA554794_P_NODE_24821_length_161_cov_0.839286_g20892_i0 PRJNA554794 24821 161 0.839286 1.35125046 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 72.8 2.11e-13   NR XP_004336616.1 1257118 g20892 i0 62.3 4.7888198757764 53 20 98.8 0 3 161 7 59 XP_004336616.1 ribosomal protein L10, putative [Acanthamoeba castellanii str. Neff] diamond 771 72.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27472149 27472149 PRJNA554794_P_NODE_9943_length_402_cov_1.291785_g6076_i0 PRJNA554794 9943 402 1.291785 5.1929757 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 170 5.939999999999999e-52   NR 1PRQ_A 5755 g6076 i0 64.8 2.8134328358209 125 44 93.3 0 20 394 1 125 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 1131 170 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28956237 28956237 PRJNA554794_P_NODE_19568_length_208_cov_1.163522_g15639_i0 PRJNA554794 19568 208 1.163522 2.42012576 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92 9.61e-22   NR XP_004341583.1 1257118 g15639 i0 74.1 1.6875 58 15 83.7 0 28 201 11 68 XP_004341583.1 ribosomal protein S9, putative [Acanthamoeba castellanii str. Neff] diamond 351 92.8 0.991379310344828 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29194180 29194180 PRJNA554794_P_NODE_14329_length_223_cov_0.977011_g10400_i0 PRJNA554794 14329 223 0.977011 2.17873453 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 132 2.6000000000000002e-37   NR XP_004368153.1 1257118 g10400 i0 84.9 4.91031390134529 73 10 98.2 1 221 3 55 126 XP_004368153.1 ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] diamond 1095 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29667279 29667279 PRJNA554794_P_NODE_14970_length_213_cov_2.585366_g11041_i0 PRJNA554794 14970 213 2.585366 5.50682958 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 91.3 9.04e-21   NR XP_004337597.1 1257118 g11041 i0 61.4 0.985915492957746 70 24 98.6 2 1 210 21 87 XP_004337597.1 uncharacterized protein ACA1_164640 [Acanthamoeba castellanii str. Neff] diamond 210 91.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30236209 30236209 PRJNA554794_P_NODE_21792_length_176_cov_1.031496_g17863_i0 PRJNA554794 21792 176 1.031496 1.81543296 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 64.7 2.03e-11   NR XP_004348720.1 1257118 g17863 i0 54.5 1.77272727272727 55 25 93.8 0 173 9 74 128 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 312 64.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30331524 30331524 PRJNA554794_P_NODE_14452_length_220_cov_0.836257_g10523_i0 PRJNA554794 14452 220 0.836257 1.8397654 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 71.2 2.25e-13   NR XP_004344009.1 1257118 g10523 i0 68.6 0.695454545454545 51 16 69.5 0 67 219 9 59 XP_004344009.1 Vtype ATPase, C subunit [Acanthamoeba castellanii str. Neff] diamond 153 71.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32638624 32638624 PRJNA554794_P_NODE_15060_length_212_cov_0.926380_g11131_i0 PRJNA554794 15060 212 0.92638 1.9639256 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 84.7 3.98e-17   NR XP_004335836.1 1257118 g11131 i0 54.4 0.962264150943396 68 29 93.4 1 13 210 35 102 XP_004335836.1 uncharacterized protein ACA1_076760 [Acanthamoeba castellanii str. Neff] diamond 204 84.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;