contig_metadata
8 rows where bioproject = "PRJNA551951", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4951019 | 4951019 | PRJNA551951_S_NODE_17204_length_154_cov_1.630252_g17086_i0 | PRJNA551951 | 17204 | 154 | 1.630252 | 2.5105880800000002 | Treponema | 157 | Bacteria | Bacteria | 270 | 3.2099999999999992e-68 | NTclustered | gi|1996291085|gb|CP027017.1| | 58231 | g17086 | i0 | 98.693 | 190.675324675325 | 153 | 1 | 99 | 1 | 1 | 152 | 1015609 | 1015457 | Treponema medium strain T19 chromosome, complete genome | blastn | 29364 | 270 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 10051198 | 10051198 | PRJNA551951_S_NODE_10068_length_235_cov_2.780000_g9950_i0 | PRJNA551951 | 10068 | 235 | 2.78 | 6.533 | Treponema | 157 | Bacteria | Bacteria | 401 | 1.8199999999999993e-107 | NTclustered | gi|1868715119|emb|LR796240.1| | 69713 | g9950 | i0 | 97.854 | 72.4255319148936 | 233 | 4 | 99 | 1 | 1 | 233 | 2486843 | 2487074 | Treponema socranskii subsp. buccale strain Marseille-CSURQ0203 genome assembly, chromosome: contig00001 | blastn | 17020 | 405 | 0.990123456790123 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema socranskii | ||
| 10051467 | 10051467 | PRJNA551951_S_NODE_7368_length_300_cov_12.860377_g7250_i0 | PRJNA551951 | 7368 | 300 | 12.860377 | 38.581131 | Treponema | 157 | Bacteria | Bacteria | 388 | 1.87e-103 | NTclustered | gi|719625061|gb|CP009227.1| | 1539298 | g7250 | i0 | 91.289 | 186.106666666667 | 287 | 22 | 95 | 3 | 16 | 300 | 1285706 | 1285991 | Treponema sp. OMZ 838, complete genome | blastn | 55832 | 388 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 838 | ||
| 15151030 | 15151030 | PRJNA551951_S_NODE_3472_length_496_cov_7.028200_g3360_i0 | PRJNA551951 | 3472 | 496 | 7.0282 | 34.859872 | Treponema | 157 | Bacteria | Bacteria | 760 | 0 | NTclustered | gi|2265136109|gb|CP051197.1| | 69710 | g3360 | i0 | 95.957 | 182.665322580645 | 470 | 15 | 95 | 4 | 21 | 489 | 325222 | 325688 | Treponema vincentii strain OMZ 802 chromosome, complete genome | blastn | 90602 | 760 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 18372214 | 18372214 | PRJNA551951_S_NODE_10355_length_230_cov_2.594872_g10237_i0 | PRJNA551951 | 10355 | 230 | 2.594872 | 5.9682056 | Treponema denticola | 158 | Bacteria | Bacteria | 359 | 1.0799999999999999e-94 | NTclustered | gi|2265190365|gb|CP054477.1| | 158 | g10237 | i0 | 98.058 | 18.9826086956522 | 206 | 4 | 90 | 0 | 1 | 206 | 1888615 | 1888820 | Treponema denticola strain OMZ 823 chromosome, complete genome | blastn | 4366 | 359 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 18372227 | 18372227 | PRJNA551951_S_NODE_11035_length_218_cov_1.442623_g10917_i0 | PRJNA551951 | 11035 | 218 | 1.442623 | 3.14491814 | Treponema vincentii | 69710 | Bacteria | Bacteria | 110 | 1.13e-19 | NTclustered | gi|1807378492|gb|CP048020.1| | 69710 | g10917 | i0 | 81.159 | 0.63302752293578 | 138 | 24 | 63 | 2 | 80 | 216 | 193544 | 193680 | Treponema vincentii strain OMZ 804 chromosome, complete genome | blastn | 138 | 110 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 22197574 | 22197574 | PRJNA551951_S_NODE_9338_length_251_cov_2.300926_g9220_i0 | PRJNA551951 | 9338 | 251 | 2.300926 | 5.77532426 | Treponema socranskii | 53419 | Bacteria | Bacteria | 449 | 6.899999999999999e-122 | NTclustered | gi|2265187740|gb|CP054258.1| | 69713 | g9220 | i0 | 98.814 | 148.585657370518 | 253 | 1 | 100 | 2 | 1 | 251 | 906831 | 907083 | Treponema socranskii subsp. buccale strain ATCC 35534 chromosome, complete genome | blastn | 37295 | 449 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema socranskii | ||
| 25349147 | 25349147 | PRJNA551951_S_NODE_11420_length_212_cov_2.813559_g11302_i0 | PRJNA551951 | 11420 | 212 | 2.813559 | 5.96474508 | Treponema | 157 | Bacteria | Bacteria | 355 | 1.27e-93 | NTclustered | gi|1996296230|gb|CP031393.1| | 58231 | g11302 | i0 | 96.729 | 195.245283018868 | 214 | 5 | 100 | 1 | 1 | 212 | 1013890 | 1014103 | Treponema medium strain ATCC 700293 chromosome, complete genome | blastn | 41392 | 355 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;