RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA551951" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA551951 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24746871 24746871 PRJNA551951_S_NODE_6480_length_331_cov_1.307432_g6362_i0 PRJNA551951 6480 331 1.307432 4.32759992 Powellomycetaceae 1134080 Fungi Fungi 159 4.85e-43   NR KAJ3178436.1 109894 g6362 i0 71.3 3.71601208459214 101 29 91.5 0 304 2 502 602 KAJ3178436.1 hypothetical protein HDU87_003510 [Geranomyces variabilis] diamond 1230 159 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
30994528 30994528 PRJNA551951_S_NODE_6434_length_333_cov_1.738255_g6316_i0 PRJNA551951 6434 333 1.738255 5.78838915 Fimicolochytrium jonesii 1396493 Fungi Fungi 184 6.3e-54   NR XP_052922638.1 1396493 g6316 i0 83.8 0.945945945945946 105 17 94.6 0 316 2 1 105 XP_052922638.1 chaperonin 10-like protein [Fimicolochytrium jonesii] diamond 315 184 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;