RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA551951" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA551951 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5624425 5624425 PRJNA551951_S_NODE_2905_length_550_cov_131.908738_g2797_i0 PRJNA551951 2905 550 131.908738 725.498059 Campylobacter showae 204 Bacteria Bacteria 931 0   NTclustered gi|1483583529|emb|LT631453.1| 204 g2797 i0 100 209.98 504 0 92 0 22 525 389363 389866 Campylobacter showae strain B91_SCBr genome assembly, chromosome: I blastn 115489 931 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
31862667 31862667 PRJNA551951_S_NODE_15997_length_162_cov_1.574803_g15879_i0 PRJNA551951 15997 162 1.574803 2.55118086 Pseudomonadati 3379134 Bacteria Bacteria 111 1.27e-29   NR WP_323471022.1 197 g15879 i0 100 1.96296296296296 53 0 98.1 0 2 160 71 123 WP_323471022.1 hypothetical protein, partial [Campylobacter jejuni] diamond 318 111 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;